Only allow CHEBI terms that are known to be pH 7.3 valid.

geneontology · Jan 21, 2025 · d52ffed · d52ffed
1 parent fc4a219
commit d52ffed
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -671,8 +671,7 @@ chebi_pH_7_3_check: reports/referenced_chebi_terms.tsv ../biochebi/chebi_pH7_3_m
 	tail -n +2 reports/referenced_chebi_terms.tsv | sed 's/<http:\/\/purl.obolibrary.org\/obo\/CHEBI_//g' | sed 's/>//g' | sort -u >tmp_referenced_chebi_nums.txt &&\
 	tail -n +2 ../biochebi/chebi_pH7_3_mapping.tsv | cut -f 1 | sort -u >tmp_mapped_chebi_nums.txt &&\
 	tail -n +2 ../biochebi/chebi_pH7_3_mapping.tsv | cut -f 2 | sort -u >tmp_7_3_chebi_nums.txt &&\
-	comm -12 tmp_referenced_chebi_nums.txt tmp_mapped_chebi_nums.txt >tmp_referenced_mapped_chebi_nums.txt &&\
-	comm -23 tmp_referenced_mapped_chebi_nums.txt tmp_7_3_chebi_nums.txt >tmp_referenced_chebi_nums_not_7_3.txt &&\
+	comm -23 tmp_referenced_chebi_nums.txt tmp_7_3_chebi_nums.txt >tmp_referenced_chebi_nums_not_7_3.txt &&\
 	if [ -s 'tmp_referenced_chebi_nums_not_7_3.txt' ]; then echo "ERROR: CHEBI IDs should be mapped to pH 7.3:" && cat tmp_referenced_chebi_nums_not_7_3.txt && exit 1; else exit 0; fi
 
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