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created new term fixes #29544 #29614

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Jan 28, 2025
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created new term fixes #29544 #29614

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ac23c9e
created new term fixes #29544
pgaudet Jan 28, 2025
8a06d45
obsoleted term fixes #29615
pgaudet Jan 28, 2025
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48 changes: 37 additions & 11 deletions src/ontology/go-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -34418,15 +34418,15 @@ synonym: "NAD-linked aldehyde dehydrogenase activity" RELATED [EC:1.2.1.3]
synonym: "propionaldehyde dehydrogenase activity" RELATED [EC:1.2.1.3]
xref: EC:1.2.1.3
xref: MetaCyc:ALDHDEHYDROG-RXN
xref: RHEA:16185
xref: RHEA:25294 {source="skos:narrowMatch"}
xref: RHEA:16185 {source="skos:exactMatch"}
xref: UM-BBD_reactionID:r0003
xref: UM-BBD_reactionID:r0023
xref: UM-BBD_reactionID:r0605
xref: Wikipedia:Aldehyde_dehydrogenase_(NAD+)
is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27180" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28144" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI

[Term]
id: GO:0004030
Expand All @@ -34435,10 +34435,11 @@ namespace: molecular_function
def: "Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+." [EC:1.2.1.5]
synonym: "aldehyde:NAD(P)+ oxidoreductase activity" RELATED [EC:1.2.1.5]
synonym: "ALDH" RELATED [EC:1.2.1.5]
xref: EC:1.2.1.5
xref: EC:1.2.1.5 {source="skos:exactMatch"}
xref: MetaCyc:ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN
is_a: GO:0016620 ! oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28183" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI

[Term]
id: GO:0004031
Expand Down Expand Up @@ -133325,7 +133326,6 @@ xref: MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN
xref: RHEA:21660
xref: UM-BBD_enzymeID:r0214
xref: UM-BBD_enzymeID:r0222
is_a: GO:0019115 ! benzaldehyde dehydrogenase [NAD(P)+] activity
is_a: GO:0033721 ! aldehyde dehydrogenase (NADP+) activity

[Term]
Expand Down Expand Up @@ -133354,7 +133354,6 @@ xref: MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN
xref: RHEA:11840
xref: UM-BBD_reactionID:r0269
is_a: GO:0004029 ! aldehyde dehydrogenase (NAD+) activity
is_a: GO:0019115 ! benzaldehyde dehydrogenase [NAD(P)+] activity

[Term]
id: GO:0018480
Expand Down Expand Up @@ -140173,11 +140172,15 @@ consider: GO:0018577

[Term]
id: GO:0019115
name: benzaldehyde dehydrogenase [NAD(P)+] activity
name: obsolete benzaldehyde dehydrogenase [NAD(P)+] activity
namespace: molecular_function
def: "Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+." [GOC:curators]
is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
def: "OBSOLETE. Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+." [GOC:curators]
comment: This term was obsoleted because it is an unnecessary grouping class.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27180" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29615" xsd:anyURI
is_obsolete: true
consider: GO:0018477
consider: GO:0018479

[Term]
id: GO:0019116
Expand Down Expand Up @@ -196205,10 +196208,11 @@ def: "Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H
synonym: "aldehyde:NADP+ oxidoreductase activity" RELATED [EC:1.2.1.4]
synonym: "NADP-acetaldehyde dehydrogenase activity" RELATED [EC:1.2.1.4]
synonym: "NADP-dependent aldehyde dehydrogenase activity" RELATED [EC:1.2.1.4]
xref: EC:1.2.1.4
xref: EC:1.2.1.4 {source="skos:exactMatch"}
xref: MetaCyc:ALDEHYDE-DEHYDROGENASE-NADP+-RXN
xref: RHEA:11888
xref: RHEA:11888 {source="skos:exactMatch"}
is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI

[Term]
id: GO:0033722
Expand Down Expand Up @@ -311098,7 +311102,7 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i

[Term]
id: GO:0050269
name: coniferyl-aldehyde dehydrogenase activity
name: coniferyl-aldehyde dehydrogenase [NAD(P)+] activity
namespace: molecular_function
def: "Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+." [EC:1.2.1.68]
synonym: "coniferyl aldehyde:NAD(P)+ oxidoreductase activity" RELATED [EC:1.2.1.68]
Expand Down Expand Up @@ -451422,6 +451426,28 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
created_by: pg
creation_date: 2025-01-27T14:40:44Z

[Term]
id: GO:0140087
name: acetaldehyde dehydrogenase (NAD+) activity
namespace: molecular_function
def: "Catalysis of the reaction: acetaldehyde + NAD+ + H2O = acetate + NADH + 2 H+." [PMID:9473035, RHEA:25294]
xref: RHEA:25294
is_a: GO:0004029 ! aldehyde dehydrogenase (NAD+) activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
created_by: pg
creation_date: 2025-01-28T07:26:40Z

[Term]
id: GO:0140088
name: acetaldehyde dehydrogenase (NADP+) activity
namespace: molecular_function
def: "Catalysis of the reaction: acetaldehyde + NADP+ + H2O = acetate + NADPH + 2 H+." [PMID:15659684, PMID:9473035, RHEA:25298]
xref: RHEA:25298
is_a: GO:0033721 ! aldehyde dehydrogenase (NADP+) activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
created_by: pg
creation_date: 2025-01-28T07:28:10Z

[Term]
id: GO:0140090
name: membrane curvature sensor activity
Expand Down
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