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removed do not annotate fixes #29584 #29626

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Jan 30, 2025
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removed do not annotate fixes #29584 #29626

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17f7552
removed do not annotate fixes #29584
pgaudet Jan 30, 2025
700e6f6
fixed parents for #27678
pgaudet Jan 30, 2025
7a3c9de
obsoleted term fixes #20017
pgaudet Jan 30, 2025
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49 changes: 28 additions & 21 deletions src/ontology/go-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -33331,7 +33331,7 @@ synonym: "reduced nicotinamide-adenine dinucleotide (phosphate) dehydrogenase ac
synonym: "viologen accepting pyridine nucleotide oxidoreductase activity" NARROW [EC:1.6.5.2]
synonym: "vitamin K reductase activity" NARROW [EC:1.6.5.2]
synonym: "vitamin-K reductase activity" NARROW [EC:1.6.5.2]
xref: EC:1.6.5.2
xref: EC:1.6.5.2 {source="skos:exactMatch"}
xref: MetaCyc:NQOR-RXN
xref: UM-BBD_reactionID:r0227
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
Expand Down Expand Up @@ -33427,9 +33427,9 @@ synonym: "TPNH dehydrogenase activity" RELATED [EC:1.6.99.1]
synonym: "TPNH-diaphorase activity" RELATED [EC:1.6.99.1]
synonym: "triphosphopyridine diaphorase activity" RELATED [EC:1.6.99.1]
synonym: "triphosphopyridine nucleotide diaphorase activity" RELATED [EC:1.6.99.1]
xref: EC:1.6.99.1
xref: EC:1.6.99.1 {source="skos:exactMatch"}
xref: MetaCyc:NADPH-DEHYDROGENASE-RXN
xref: RHEA:13149
xref: RHEA:13149 {source="skos:exactMatch"}
is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H

[Term]
Expand All @@ -33442,7 +33442,8 @@ synonym: "quinone oxidoreductase activity" BROAD [EC:1.6.5.5]
synonym: "zeta-crystallin activity" NARROW [EC:1.6.5.5]
xref: EC:1.6.5.5
xref: MetaCyc:QOR-RXN
xref: RHEA:14269
xref: RHEA:14269 {source="skos:exactMatch"}
is_a: GO:0003959 ! NADPH dehydrogenase activity
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

[Term]
Expand Down Expand Up @@ -75832,6 +75833,7 @@ synonym: "ubiquinone reductase activity" EXACT []
xref: EC:7.1.1.2
xref: MetaCyc:NADH-DEHYDROG-A-RXN
xref: RHEA:29091
is_a: GO:0003954 ! NADH dehydrogenase activity
is_a: GO:0009055 ! electron transfer activity
is_a: GO:0015078 ! proton transmembrane transporter activity
is_a: GO:0015453 ! oxidoreduction-driven active transmembrane transporter activity
Expand Down Expand Up @@ -82674,6 +82676,7 @@ xref: MetaCyc:RXN0-271 {source="skos:narrowMatch"}
xref: MetaCyc:RXN0-7385 {source="skos:exactMatch"}
xref: RHEA:46164 {source="skos:exactMatch"}
is_a: GO:0003955 ! NAD(P)H dehydrogenase (quinone) activity
is_a: GO:0003959 ! NADPH dehydrogenase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28526" xsd:anyURI

[Term]
Expand Down Expand Up @@ -123822,7 +123825,7 @@ is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H
id: GO:0016656
name: monodehydroascorbate reductase (NADH) activity
namespace: molecular_function
def: "Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate." [EC:1.6.5.4]
def: "Catalysis of the reaction: 2 monodehydro-L-ascorbate radical + NADH + H+ = 2 L-ascorbate + NAD+." [RHEA:14581]
synonym: "AFR" RELATED [EC:1.6.5.4]
synonym: "AFR-reductase activity" RELATED [EC:1.6.5.4]
synonym: "ascorbate free radical reductase activity" RELATED [EC:1.6.5.4]
Expand All @@ -123838,9 +123841,9 @@ synonym: "NADH:monodehydroascorbate oxidoreductase activity" RELATED [EC:1.6.5.4
synonym: "NADH:semidehydroascorbic acid oxidoreductase activity" RELATED [EC:1.6.5.4]
synonym: "SDA reductase activity" RELATED [EC:1.6.5.4]
synonym: "semidehydroascorbate reductase activity" RELATED [EC:1.6.5.4]
xref: EC:1.6.5.4
xref: EC:1.6.5.4 {source="skos:exactMatch"}
xref: MetaCyc:1.6.5.4-RXN
xref: RHEA:14581
xref: RHEA:14581 {source="skos:exactMatch"}
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

[Term]
Expand Down Expand Up @@ -134076,7 +134079,7 @@ synonym: "NADPH:p-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.6]
xref: EC:1.6.5.6
xref: KEGG_REACTION:R05244
xref: MetaCyc:1.6.5.6-RXN
xref: RHEA:23488
xref: RHEA:23488 {source="skos:exactMatch"}
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

[Term]
Expand Down Expand Up @@ -286787,7 +286790,7 @@ is_a: GO:0016413 ! O-acetyltransferase activity
id: GO:0047186
name: N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity
namespace: molecular_function
def: "Catalysis of the reaction: N-acetylneuraminate + acetyl-CoA = N-acetyl-7-O(or 9-O)-acetylneuraminate + CoA." [EC:2.3.1.45, MetaCyc:2.3.1.45-RXN]
def: "Catalysis of the reaction: N-acetylneuraminate + acetyl-CoA = N-acetyl-7-O(or 9-O)-acetylneuraminate + CoA." [EC:2.3.1.45]
synonym: "acetyl-CoA:N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity" RELATED [EC:2.3.1.45]
synonym: "acetyl-CoA:N-acetylneuraminate-7- and/or 8-O-acetyltransferase activity" RELATED [EC:2.3.1.45]
synonym: "acetyl-CoA:N-acetylneuraminate-7- or 8-O-acetyltransferase activity" RELATED [EC:2.3.1.45]
Expand Down Expand Up @@ -309194,11 +309197,11 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
id: GO:0050136
name: NADH:ubiquinone reductase (non-electrogenic) activity
namespace: molecular_function
def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [EC:1.6.5.9, GOC:mah, RHEA:46160]
def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [RHEA:46160]
synonym: "NADH dehydrogenase (quinone) activity" RELATED []
xref: EC:1.6.5.9
xref: EC:1.6.5.9 {source="skos:exactMatch"}
xref: MetaCyc:1.6.99.5-RXN
xref: RHEA:46160
xref: RHEA:46160 {source="skos:exactMatch"}
is_a: GO:0003954 ! NADH dehydrogenase activity
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25784" xsd:anyURI
Expand Down Expand Up @@ -316029,16 +316032,16 @@ id: GO:0050625
name: 2-hydroxy-1,4-benzoquinone reductase activity
namespace: molecular_function
alt_id: GO:0018540
def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [EC:1.6.5.7, RHEA:12428]
def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [RHEA:12428]
synonym: "1,2,4-trihydroxybenzene:NAD oxidoreductase activity" RELATED [EC:1.6.5.7]
synonym: "1,2,4-trihydroxybenzene:NAD+ oxidoreductase activity" RELATED [EC:1.6.5.7]
synonym: "2-hydroxy-1,4-benzoquinone:NADH oxidoreductase activity" RELATED [EC:1.6.5.7]
synonym: "hydroxybenzoquinone reductase activity" RELATED [EC:1.6.5.-]
synonym: "NADH:2-hydroxy-1,4-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.7]
xref: EC:1.6.5.7
xref: EC:1.6.5.7 {source="skos:exactMatch"}
xref: KEGG_REACTION:R05399
xref: MetaCyc:1.6.5.7-RXN
xref: RHEA:12428
xref: RHEA:12428 {source="skos:exactMatch"}
xref: UM-BBD_reactionID:r0667
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Expand Down Expand Up @@ -407466,11 +407469,13 @@ creation_date: 2010-07-12T10:32:27Z

[Term]
id: GO:0090363
name: regulation of proteasome core complex assembly
name: obsolete regulation of proteasome core complex assembly
namespace: biological_process
def: "Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles." [GOC:dph, GOC:elh, GOC:tb]
intersection_of: GO:0065007 ! biological regulation
intersection_of: regulates GO:0080129 ! proteasome core complex assembly
def: "OBSOLETE. Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles." [GOC:dph, GOC:elh, GOC:tb]
comment: This term was obsoleted because was too specific.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20017" xsd:anyURI
is_obsolete: true
consider: GO:0043248
created_by: tb
creation_date: 2010-07-12T10:48:57Z

Expand Down Expand Up @@ -439060,8 +439065,10 @@ replaced_by: GO:0008753
id: GO:0103036
name: NADH:menaquinone oxidoreductase activity
namespace: molecular_function
def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz]
def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz, RHEA:29099]
xref: MetaCyc:RXN0-5388
xref: RHEA:29099
is_a: GO:0003954 ! NADH dehydrogenase activity
is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

[Term]
Expand Down Expand Up @@ -451601,7 +451608,6 @@ name: molecular carrier activity
namespace: molecular_function
def: "Directly binding to a specific ion or molecule and delivering it either to an acceptor molecule or to a specific location." [GOC:molecular_function_refactoring, GOC:pdt]
comment: Note that a carrier moves with its substrate/cargo, while a transporter does not move with the cargo, but facilitates the change in localization.
subset: gocheck_do_not_annotate
subset: goslim_euk_cellular_processes_ribbon
subset: goslim_generic
subset: goslim_plant_ribbon
Expand All @@ -451611,6 +451617,7 @@ is_a: GO:0003674 ! molecular_function
relationship: has_part GO:0005488 ! binding
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14221" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20848" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29584" xsd:anyURI
created_by: pg
creation_date: 2017-09-19T13:10:18Z

Expand Down
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