Update install applications

docs/server/install-apps.md

@@ -1,21 +1,21 @@
 # Install Applications
 
-An online repository of all available applications can be found [here](http://apps.cloudgene.io).
 
 ## Web-Application
 
 Open the **Admin Panel** and click on the **Applications** tab to see all installed applications.
 
+By clicking on the Install Apps button, you can install an application either by entering a URL (HTTP or a local path) or by selecting from GitHub and entering a repository, optionally specifying a version.
+
 <div class="screenshot">
 <img src="../../images/screenshots/install-apps.png">
 </div>
 
-After clicking on **Install App** > **from apps.clougene.io** a list of all available applications registed in our [repository](http://apps.cloudgene.io) appears. Choose an application you want to use an click on **Install** to start the installation process.
-
 <div class="screenshot">
-<img src="../../images/screenshots/install--app-from-repo.png">
+<img src="../../images/screenshots/install-app-from-github.png">
 </div>
 
+
 Depending on your Internet connection and computer resources it could take several minutes. If the installation was successful, you should see your application in the the **Applications** tab:
 
 <div class="screenshot">
@@ -33,25 +33,26 @@ You can install also applications by using the [`install`](/cli/cloudgene-instal
 ```sh
 cloudgene install <location>
 ```
-`Location` could be a zip file or a yaml file accessible via http or which is located on the local filesystem. For example, the following command installs an application that is hosted on a web server:
+
+`location` could be a zip file or a yaml file accessible via http or which is located on the local filesystem. For example, the following command installs an application that is hosted on a web server:
 
 ```sh
-cloudgene install https://github.com/lukfor/hello-cloudgene/archive/master.zip
+cloudgene install https://github.com/lukfor/cg-fetchngs/archive/master.zip
 ```
 
-You can also install applications directly from GitHub. For example, the latest version of the **hello-cloudgene** application can be installed by using the following command:
+You can also install applications directly from GitHub. For example, the latest version of the **cg-fetchngs** application can be installed by using the following command:
 
 ```sh
-cloudgene install lukfor/hello-cloudgene
+cloudgene install lukfor/cg-fetchngs
 ```
 
 To install a specific version of a application you can specify a git tag:
 
 ```sh
-cloudgene install lukfor/hello-cloudgene@1.2.0
+cloudgene install lukfor/cg-fetchngs@1.0.0
 ```
 
-The ids are created automatically for all applications (e.g. `hello-cloudgene@1.2.0`).
+The ids are created automatically for all applications (e.g. `cg-fetchngs@1.0.0`).
 
 
 ### List installed applications
@@ -74,14 +75,9 @@ An installed application can be removed with the `remove` command:
 cloudgene remove <id>
 ```
 
-For example to remove **hello-cloudgne 1.2.0** ,
+For example to remove **cg-fetchngs 1.0.0** ,
 
 ```sh
-cloudgene remove hello-cloudgene@1.2.0
+cloudgene remove cg-fetchngs@1.0.0
 ```
 
-## What's next?
-
-- [Connect Cloudgene to a Hadoop Cluster](/daemon/hadoop) to enable applications to use MapReduce, Spark, PIG or other Hadoop based technologies
-- Install R and RMarkdown to enable applications to create reports
-- Install Docker to enable applications to take advantage of Docker images

mkdocs.yml

@@ -41,14 +41,13 @@ nav:
 - Installation: installation.md
 - Documentation:
   - Getting Started: server/getting-started.md
-  - Server Management:
-    - Install Applications: server/install-apps.md
-    - Manage Permissions: server/permissions.md
-    - Manage Jobs: server/jobs.md
-    - Configuration: server/configuration.md
-    - Configure Nextflow: server/configure-nextflow.md
-    - Customization: server/customization.md
-    - Administration: server/administration.md
+  - Install Applications: server/install-apps.md
+  - Manage Permissions: server/permissions.md
+  - Manage Jobs: server/jobs.md
+  - Configuration: server/configuration.md
+  - Configure Nextflow: server/configure-nextflow.md
+  - Customization: server/customization.md
+  - Administration: server/administration.md
   - Develop Applications:
     - Getting Started: developers/introduction.md
     - Inputs: developers/inputs.md
@@ -77,9 +76,9 @@ nav:
     - List Jobs: api/list-jobs.md
     - Job Details: api/job-details.md
 - Tutorials:
-  - Using AppLinks to link to other applications: tutorials/application-links.md
   - Getting Started with Cloudgene and Nextflow Pipeline Integration: tutorials/nextflow-integration.md
   - Getting Started with Reporting: tutorials/nextflow-reporting.md
+  - Using AppLinks to link to other applications: tutorials/application-links.md
 - About: about.md
 
 markdown_extensions: