sci-biology/neuroconv: add 0.4.6

Signed-off-by: Horea Christian <[email protected]>

sci-biology/neuroconv/Manifest

@@ -1 +1,2 @@
 DIST neuroconv-0.2.4.gh.tar.gz 757136 BLAKE2B a3a21b3a00667bde4461d91ade514891c8710f309413b100e1cccfd2684dfcbf9b21feaf4f58b3c5ff845aa08e69bf47467b411926eeb7d3b2862753302b1d9b SHA512 293038feae2704442b81ba0f012d775ba96d7bdffb6aaacaaebd09ca2f8b39e91ef4ea69c972abf060f0f9ab8cb76fedb77dda67455fa992edd52f0e6e504b0d
+DIST neuroconv-0.4.6.gh.tar.gz 1000357 BLAKE2B 24fc43a4c7c1cb588b5af49c1da2348f775506efd0c36b838b7882cf4a03520dac6e0fe6fd17310c17ae84371d3eeb8e3aec4b16fc3b07c10bec2e3c46e51dff SHA512 eeccc6900b6ae9f053f67503a93c4040033afc8b056b8869ad562f7cd2dd802cce2b7a467b5ccaa20fe84a188697821c328043b6177302d1913a30a5a789ae15

sci-biology/neuroconv/neuroconv-0.4.6.ebuild

@@ -0,0 +1,58 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="Create NWB files from proprietary formats."
+HOMEPAGE="https://github.com/catalystneuro/neuroconv"
+SRC_URI="https://github.com/catalystneuro/neuroconv/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="+ecephys +icephys +ophys"
+
+RDEPEND="
+	dev-python/h5py[${PYTHON_USEDEP}]
+	dev-python/hdmf[${PYTHON_USEDEP}]
+	dev-python/jsonschema[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/nwbinspector[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/parse[${PYTHON_USEDEP}]
+	dev-python/psutil[${PYTHON_USEDEP}]
+	dev-python/pynwb[${PYTHON_USEDEP}]
+	dev-python/pyyaml[${PYTHON_USEDEP}]
+	dev-python/scipy[${PYTHON_USEDEP}]
+	dev-python/tqdm[${PYTHON_USEDEP}]
+	dev-python/pydantic[${PYTHON_USEDEP}]
+	ecephys? (
+		dev-python/spikeinterface[${PYTHON_USEDEP}]
+	)
+	icephys? (
+		dev-python/neo[${PYTHON_USEDEP}]
+	)
+	ophys? (
+		sci-biology/roiextractors[${PYTHON_USEDEP}]
+	)
+"
+BDEPEND="
+	test? (
+		dev-python/parameterized[${PYTHON_USEDEP}]
+	)
+"
+
+distutils_enable_tests pytest
+
+python_test() {
+	# Additional tests require complex data getting infrastructure, ophys tests still have issues:
+	# https://github.com/catalystneuro/neuroconv/issues/305
+	local my_tests=( "tests/test_minimal" )
+	use ecephys && my_tests+=( "tests/test_ecephys" )
+	#use ophys && my_tests+=( "tests/test_ophys" )
+	epytest ${my_tests[*]// /|}
+}