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Datetime #1

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Datetime #1

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9b1f9b9
Replaced Wed 16 Oct 15:03:59 BST 2019 with a string to name output f…
MatthAlex Oct 16, 2019
71b55df
Removed Wed 16 Oct 15:07:45 BST 2019 from function, as it is handled …
MatthAlex Oct 16, 2019
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1 change: 0 additions & 1 deletion Applications/code/call_run_for_each_input.m
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ function call_run_for_each_input(inputI, dataL)
coreNAME_woL = 'newStack';
dataL = dataL;
inputN = inputI;
r_date = date;
exactStart = -1;
target_est = 'step';
dataNormalize = 0;
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11 changes: 8 additions & 3 deletions Applications/construct_hmm_stack.m
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Expand Up @@ -22,22 +22,27 @@ function construct_hmm_stack(recordInfo)

%% Run the profile-HMM algorithm

% Set `datetime` string
t = datetime;
DateStringTest = datestr(t);
folderDateString = strrep(DateStringTest,' ','_');

cd code

% Criteria of convergence
iterTol = 0.1; %% Iteration stops if log likelihood does not increase larger than iterTol%
iterMax = 10; %% Iteration stops if the number of iteration is larget than iterMax.

contiIter = true;
run_for_communication('newStack', dataL, date, 1, 'step', 0);
run_for_communication('newStack', dataL, folderDateString, 1, 'step', 0);
i = 0;
while contiIter == true
i = i + 1;

for inputI = 1 : length(name)
call_run_for_each_input(inputI, dataL)
call_run_for_each_input(inputI, dataL, folderDateString)
end
LL(i) = run_for_communication('newStack', dataL, date, 1, 'step', 0);
LL(i) = run_for_communication('newStack', dataL, folderDateString, 1, 'step', 0);

if i ~= 1
if abs(LL(i)-LL(i-1))/LL(i-1) < iterTol/100
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