Merge pull request #1242 from glotzerlab/release-v3.0.0-beta.14

Release v3.0.0 beta.14
glotzerlab · Feb 18, 2022 · 34ec666 · 34ec666
2 parents b5519e4 + 376bff7
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diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 3.0.0-beta.13
+current_version = 3.0.0-beta.14
 commit = False
 tag = False
 parse = ^(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)(?:-(?P<prerelease>(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))(?:\.(?P<number>0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)))?$

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -7,43 +7,48 @@ Change Log
 v3.x
 ----
 
-v3.0.0-beta.14 (not yet released)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+v3.0.0-beta.14 (2022-02-18)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 *Added*
 
-* ``hpmc.external.field.Harmonic`` - harmonic potential of particles to specific sites in
+* ``hoomd.hpmc.external.field.Harmonic`` - harmonic potential of particles to specific sites in
   the simulation box and orientations.
 * Support ``cereal`` 1.3.1
 * Guide on how to model molecular systems.
 * ``version.floating_point_precision`` - Floating point width in bits for the particle
   properties and local calculations.
-* ``md.pair.LJ.tail_correction`` - Option to enable the isotropic integrated long range tail
+* ``hoomd.md.pair.LJ.tail_correction`` - Option to enable the isotropic integrated long range tail
   correction.
-* ``md.Integrator.linear_momentum`` - Compute the total system linear momentum. Loggable.
-* ``md.bond.Table`` - Tabulated bond potential.
-* ``md.angle.Table`` - Tabulated angle potential.
-* ``md.dihedral.Table`` - Tabulated dihedral potential.
-* ``md.improper.Harmonic`` - Compute the harmonic improper potential and forces.
+* ``hoomd.md.Integrator.linear_momentum`` - Compute the total system linear momentum. Loggable.
+* ``hoomd.md.bond.Table`` - Tabulated bond potential.
+* ``hoomd.md.angle.Table`` - Tabulated angle potential.
+* ``hoomd.md.dihedral.Table`` - Tabulated dihedral potential.
+* ``hoomd.md.improper.Harmonic`` - Compute the harmonic improper potential and forces.
 * Tutorial on Organizing and executing simulations.
 * C++ and build system overview in ``ARCHITECTURE.md``.
-* ``hpmc.external.wall`` - Overlap checks between particles and wall surfaces.
+* ``hoomd.hpmc.external.wall`` - Overlap checks between particles and wall surfaces.
+* ``hoomd.md.pair.ansio.ALJ`` - an anisotropic Lennard-Jones-like pair potential for polyhedra and
+  ellipsoids.
+* New optional dependency: ``coxeter``, needed for some ``ALJ`` methods.
 
 *Changed*
 
-* Support variant translational and rotational spring constants in ``hpmc.external.field.Harmonic``.
-* [breaking] Renamed ``md.angle.Cosinesq`` to ``md.angle.CosineSquared``.
-* [breaking] `hoomd.Box` no longer has a `matrix` property use ``to_matrix`` and ``from_matrix``.
+* Support variant translational and rotational spring constants in
+  ``hoomd.hpmc.external.field.Harmonic``.
+* [breaking] Renamed ``hoomd.md.angle.Cosinesq`` to ``hoomd.md.angle.CosineSquared``.
+* [breaking] ``hoomd.Box`` no longer has a ``matrix`` property use ``to_matrix`` and
+  ``from_matrix``.
 
 *Fixed*
 
 * Compilation errors on FreeBSD.
 * ``TypeError`` when instantiating special pair forces.
-* Inconsistent state when using the ``walls`` setter of a ``md.external.wall.WallPotential``.
+* Inconsistent state when using the ``walls`` setter of a ``hoomd.md.external.wall.WallPotential``.
 
 *Removed*
 
-* [breaking] Removed ``md.pair.SLJ`` potential and wall. Use ``md.pair.ExpandedLJ``.
+* [breaking] Removed ``hoomd.md.pair.SLJ`` potential and wall. Use ``hoomd.md.pair.ExpandedLJ``.
 * [breaking] ``hoomd.Box.lattice_vectors`` property no longer exists.
 
 v3.0.0-beta.13 (2022-01-18)

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -14,7 +14,7 @@ add_subdirectory (CMake)
 
 ################################
 ## Version information
-set(HOOMD_VERSION_RAW "3.0.0-beta.13")
+set(HOOMD_VERSION_RAW "3.0.0-beta.14")
 string(REGEX MATCH "(.*)\\.(.*)\\.(.*)$" _hoomd_version_match ${HOOMD_VERSION_RAW})
 set(HOOMD_VERSION_MAJOR ${CMAKE_MATCH_1})
 set(HOOMD_VERSION_MINOR ${CMAKE_MATCH_2})

diff --git a/hoomd/hpmc/external/user.py b/hoomd/hpmc/external/user.py
@@ -59,9 +59,9 @@ class CPPExternalPotential(ExternalField):
         Your code *must* return a value.
 
     .. _VectorMath.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v3.0.0-beta.13/hoomd/VectorMath.h
+            v3.0.0-beta.14/hoomd/VectorMath.h
     .. _BoxDim.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v3.0.0-beta.13/hoomd/BoxDim.h
+            v3.0.0-beta.14/hoomd/BoxDim.h
 
     Example:
         .. code-block:: python

diff --git a/hoomd/hpmc/pair/user.py b/hoomd/hpmc/pair/user.py
@@ -67,7 +67,7 @@ class CPPPotentialBase(_HOOMDBaseObject):
                 HOOMD-blue source code.
 
     .. _VectorMath.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v3.0.0-beta.13/hoomd/VectorMath.h
+            v3.0.0-beta.14/hoomd/VectorMath.h
 
     Note:
         Your code *must* return a value.

diff --git a/sphinx-doc/conf.py b/sphinx-doc/conf.py
@@ -55,8 +55,8 @@
 copyright = f'2009-{ year } The Regents of the University of Michigan'
 author = 'The Regents of the University of Michigan'
 
-version = '3.0.0-beta.13'
-release = '3.0.0-beta.13'
+version = '3.0.0-beta.14'
+release = '3.0.0-beta.14'
 
 language = None