draft

_config.yaml

@@ -1,19 +1,19 @@
 # site properties and page defaults
-title: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
-subtitle: 
+title: TIME Lab
+subtitle: Temporal Intelligence and Motion Extraction Lab
 description: 
 header: images/background.jpg
 footer: images/background.jpg
 proofer: false
 
 # site social media and other links
 links:
-  email: contact@time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab..com
-  orcid: 0000-0001-8713-9213
-  google-scholar: ETJoidYAAAAJ
-  github: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
-  twitter: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
-  youtube: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
+  email: [email protected]
+  # orcid: 0000-0001-8713-9213
+  # google-scholar: ETJoidYAAAAJ
+  # github: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
+  # twitter: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
+  # youtube: time-lab-anuDESCRIPTION=An engaging 1-3 sentence description of your lab.
 
 ### jekyll settings
 

_data/citations.yaml

@@ -1,247 +1,40 @@
 # DO NOT EDIT, GENERATED AUTOMATICALLY
 
-- id: doi:10.1093/nar/gkad1082
-  title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\
-    \ genes\_and diseases across species"
-  authors:
-  - Tim E Putman
-  - Kevin Schaper
-  - Nicolas Matentzoglu
-  - "Vincent\_P Rubinetti"
-  - "Faisal\_S Alquaddoomi"
-  - Corey Cox
-  - J Harry Caufield
-  - Glass Elsarboukh
-  - Sarah Gehrke
-  - Harshad Hegde
-  - "Justin\_T Reese"
-  - Ian Braun
-  - "Richard\_M Bruskiewich"
-  - Luca Cappelletti
-  - Seth Carbon
-  - "Anita\_R Caron"
-  - "Lauren\_E Chan"
-  - "Christopher\_G Chute"
-  - "Katherina\_G Cortes"
-  - "Vin\xEDcius De\_Souza"
-  - Tommaso Fontana
-  - "Nomi\_L Harris"
-  - "Emily\_L Hartley"
-  - Eric Hurwitz
-  - "Julius\_O B Jacobsen"
-  - Madan Krishnamurthy
-  - "Bryan\_J Laraway"
-  - "James\_A McLaughlin"
-  - "Julie\_A McMurry"
-  - "Sierra\_A T Moxon"
-  - "Kathleen\_R Mullen"
-  - "Shawn\_T O\u2019Neil"
-  - "Kent\_A Shefchek"
-  - Ray Stefancsik
-  - Sabrina Toro
-  - "Nicole\_A Vasilevsky"
-  - "Ramona\_L Walls"
-  - "Patricia\_L Whetzel"
-  - David Osumi-Sutherland
-  - Damian Smedley
-  - "Peter\_N Robinson"
-  - "Christopher\_J Mungall"
-  - "Melissa\_A Haendel"
-  - "Monica\_C Munoz-Torres"
-  publisher: Nucleic Acids Research
-  date: '2023-11-24'
-  link: https://doi.org/gs6kmr
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1101/2023.10.11.560955
-  title: Integration of 168,000 samples reveals global patterns of the human gut microbiome
-  authors:
-  - Richard J. Abdill
-  - Samantha P. Graham
-  - Vincent Rubinetti
-  - Frank W. Albert
-  - Casey S. Greene
-  - Sean Davis
-  - Ran Blekhman
-  publisher: Cold Spring Harbor Laboratory
-  date: '2023-10-11'
-  link: https://doi.org/gsvf5z
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1093/nar/gkad289
-  title: 'MyGeneset.info: an interactive and programmatic platform for community-curated
-    and user-created collections of genes'
-  authors:
-  - Ricardo Avila
-  - Vincent Rubinetti
-  - Xinghua Zhou
-  - Dongbo Hu
-  - Zhongchao Qian
-  - Marco Alvarado Cano
-  - Everaldo Rodolpho
-  - Ginger Tsueng
-  - Casey Greene
-  - Chunlei Wu
-  publisher: Nucleic Acids Research
-  date: '2023-04-18'
-  link: https://doi.org/gr5hb5
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1101/2023.01.05.522941
-  title: Hetnet connectivity search provides rapid insights into how two biomedical
-    entities are related
-  authors:
-  - Daniel S. Himmelstein
-  - Michael Zietz
-  - Vincent Rubinetti
-  - Kyle Kloster
-  - Benjamin J. Heil
-  - Faisal Alquaddoomi
-  - Dongbo Hu
-  - David N. Nicholson
-  - Yun Hao
-  - Blair D. Sullivan
-  - Michael W. Nagle
-  - Casey S. Greene
-  publisher: Cold Spring Harbor Laboratory
-  date: '2023-01-07'
-  link: https://doi.org/grmcb9
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1093/gigascience/giad047
-  title: Hetnet connectivity search provides rapid insights into how biomedical entities
-    are related
-  authors:
-  - Daniel S Himmelstein
-  - Michael Zietz
-  - Vincent Rubinetti
-  - Kyle Kloster
-  - Benjamin J Heil
-  - Faisal Alquaddoomi
-  - Dongbo Hu
-  - David N Nicholson
-  - Yun Hao
-  - Blair D Sullivan
-  - Michael W Nagle
-  - Casey S Greene
-  publisher: GigaScience
-  date: '2022-12-28'
-  link: https://doi.org/gsd85n
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1101/2022.02.18.461833
-  title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution
-    and phylogeny'
-  authors:
-  - Jacob D Krol
-  - Joseph T Burke
-  - Samuel Z Chen
-  - Lo M Sosinski
-  - Faisal S Alquaddoomi
-  - Evan P Brenner
-  - Ethan P Wolfe
-  - Vincent P Rubinetti
-  - Shaddai Amolitos
-  - Kellen M Reason
-  - John B Johnston
-  - Janani Ravi
-  publisher: Cold Spring Harbor Laboratory
-  date: '2022-02-22'
-  link: https://doi.org/gstx7j
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1186/s13059-020-02021-3
-  title: Compressing gene expression data using multiple latent space dimensionalities
-    learns complementary biological representations
-  authors:
-  - Gregory P. Way
-  - Michael Zietz
-  - Vincent Rubinetti
-  - Daniel S. Himmelstein
-  - Casey S. Greene
-  publisher: Genome Biology
-  date: '2020-05-11'
-  link: https://doi.org/gg2mjh
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1371/journal.pcbi.1007128
-  title: Open collaborative writing with Manubot
-  authors:
-  - Daniel S. Himmelstein
-  - Vincent Rubinetti
-  - David R. Slochower
-  - Dongbo Hu
-  - Venkat S. Malladi
-  - Casey S. Greene
-  - Anthony Gitter
-  publisher: PLOS Computational Biology
-  date: '2020-12-04'
-  link: https://doi.org/c7np
-  orcid: 0000-0002-4655-3773
-  plugin: sources.py
-  file: sources.yaml
-  type: paper
-  description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed
-    do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-  image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2
+- id: doi:10.48550/arXiv.2402.04857
+  title: 'Advancing Video Anomaly Detection: A Concise Review and a New Dataset'
+  authors:
+  - Liyun Zhu
+  - Lei Wang
+  - Arjun Raj
+  - Tom Gedeon
+  - Chen Chen
+  publisher: arXiv
+  date: '2024-01-01'
+  link: https://doi.org/gt3q3r
+  image: https://msad-dataset.github.io/resources/images/dataset_samples.png
   buttons:
-  - type: manubot
-    link: https://greenelab.github.io/meta-review/
-  - type: source
-    text: Manuscript Source
-    link: https://github.com/greenelab/meta-review
   - type: website
-    link: http://manubot.org/
+    link: http://msad-dataset.github.io/
   tags:
-  - open science
-  - collaboration
-  repo: greenelab/meta-review
-- id: doi:10.1101/573782
-  title: Sequential compression of gene expression across dimensionalities and methods
-    reveals no single best method or dimensionality
-  authors:
-  - Gregory P. Way
-  - Michael Zietz
-  - Vincent Rubinetti
-  - Daniel S. Himmelstein
-  - Casey S. Greene
-  publisher: Cold Spring Harbor Laboratory
-  date: '2019-03-11'
-  link: https://doi.org/gfxjxf
-  orcid: 0000-0002-4655-3773
-  plugin: orcid.py
-  file: orcid.yaml
-- id: doi:10.1016/j.csbj.2020.05.017
-  title: Constructing knowledge graphs and their biomedical applications
-  authors:
-  - David N. Nicholson
-  - Casey S. Greene
-  publisher: Computational and Structural Biotechnology Journal
-  date: '2020-01-01'
-  link: https://doi.org/gg7m48
-  image: https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg
+  - anomaly detection
+  - dataset
   plugin: sources.py
   file: sources.yaml
-- id: doi:10.7554/eLife.32822
-  title: Sci-Hub provides access to nearly all scholarly literature
-  authors:
-  - Daniel S Himmelstein
-  - Ariel Rodriguez Romero
-  - Jacob G Levernier
-  - Thomas Anthony Munro
-  - Stephen Reid McLaughlin
-  - Bastian Greshake Tzovaras
-  - Casey S Greene
-  publisher: eLife
-  date: '2018-03-01'
-  link: https://doi.org/ckcj
-  image: https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp
+- id: doi:10.48550/arXiv.2402.03019
+  title: Taylor Videos for Action Recognition
+  authors:
+  - Lei Wang
+  - Xiuyuan Yuan
+  - Tom Gedeon
+  - Liang Zheng
+  publisher: arXiv
+  date: '2024-01-01'
+  link: https://doi.org/gt3q6q
+  image: images/paper/taylor-paper-thumb.png
+  buttons:
+  - type: source
+    link: https://github.com/LeiWangR/video-ar/tree/main
+  tags:
+  - A*
   plugin: sources.py
   file: sources.yaml

_data/orcid.yaml

@@ -1 +1 @@
-- orcid: 0000-0002-4655-3773
+# - orcid: 0000-0002-4655-3773

_data/sources.yaml

@@ -1,23 +1,33 @@
-- id: doi:10.1371/journal.pcbi.1007128
-  type: paper
-  description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-  date: 2020-12-4
-  image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2
+# - id: doi:10.1371/journal.pcbi.1007128
+#   type: paper
+#   description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+#   date: 2020-12-4
+#   image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2
+#   buttons:
+#     - type: manubot
+#       link: https://greenelab.github.io/meta-review/
+#     - type: source
+#       text: Manuscript Source
+#       link: https://github.com/greenelab/meta-review
+#     - type: website
+#       link: http://manubot.org/
+#   tags:
+#     - open science
+#     - collaboration
+#   repo: greenelab/meta-review
+- id: doi:10.48550/arXiv.2402.04857
+  image: https://msad-dataset.github.io/resources/images/dataset_samples.png
   buttons:
-    - type: manubot
-      link: https://greenelab.github.io/meta-review/
-    - type: source
-      text: Manuscript Source
-      link: https://github.com/greenelab/meta-review
     - type: website
-      link: http://manubot.org/
+      link: http://msad-dataset.github.io/
   tags:
-    - open science
-    - collaboration
-  repo: greenelab/meta-review
-
-- id: doi:10.1016/j.csbj.2020.05.017
-  image: https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg
+    - anomaly detection
+    - dataset
+- id: doi:10.48550/arXiv.2402.03019
+  image: images/paper/taylor-paper-thumb.png
+  buttons:
+    - type: source
+      link: https://github.com/LeiWangR/video-ar/tree/main
+  tags:
+    - A*
 
-- id: doi:10.7554/eLife.32822
-  image: https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp

_members/dexuan-ding.md

@@ -0,0 +1,11 @@
+---
+name: Dexuan Ding
+
+image: images/team/template.jpg
+role: undergrad
+affiliation: Australian National University
+description: Student
+links:
+---
+
+Working on robust human-centric anomaly detection project.

_members/huilin-chen.md

@@ -0,0 +1,11 @@
+---
+name: Huilin Chen
+
+image: images/team/template.jpg
+role: undergrad
+affiliation: Australian National University
+description: Student
+links:
+---
+
+Working on Spatio-temporal video coding: an in-depth analysis and assessment project.