Merge pull request #984 from griffithlab/ruby-upgrade

Upgrade to Ruby 3.3
griffithlab · Mar 13, 2024 · 0c9d35d · 0c9d35d
2 parents ccf92da + 32eed77
commit 0c9d35d
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Showing 41 changed files with 2,045 additions and 2,500 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: 'ubuntu-latest'
     strategy:
       matrix:
-        ruby: ['3.0', '3.2']
+        ruby: ['3.2', '3.3']
     services:
         postgres:
           image: postgres:13

diff --git a/client/src/app/components/layout/viewer-button/viewer-button.component.html b/client/src/app/components/layout/viewer-button/viewer-button.component.html
@@ -169,6 +169,11 @@
             href="/admin">
             <a href="/admin"> Admin Console </a>
           </li>
+          <li
+            nz-menu-item
+            href="/errors">
+            <a href="/errors"> Error Monitoring </a>
+          </li>
           <li
             nz-menu-item
             href="/jobs">

diff --git a/client/src/app/generated/server.model.graphql b/client/src/app/generated/server.model.graphql
@@ -46,7 +46,7 @@ input AcceptRevisionsInput {
 }
 
 """
-Autogenerated return type of AcceptRevisions
+Autogenerated return type of AcceptRevisions.
 """
 type AcceptRevisionsPayload {
   """
@@ -224,7 +224,7 @@ input AddCommentInput {
 }
 
 """
-Autogenerated return type of AddComment
+Autogenerated return type of AddComment.
 """
 type AddCommentPayload {
   """
@@ -259,7 +259,7 @@ input AddDiseaseInput {
 }
 
 """
-Autogenerated return type of AddDisease
+Autogenerated return type of AddDisease.
 """
 type AddDiseasePayload {
   """
@@ -299,7 +299,7 @@ input AddRemoteCitationInput {
 }
 
 """
-Autogenerated return type of AddRemoteCitation
+Autogenerated return type of AddRemoteCitation.
 """
 type AddRemoteCitationPayload {
   """
@@ -334,7 +334,7 @@ input AddTherapyInput {
 }
 
 """
-Autogenerated return type of AddTherapy
+Autogenerated return type of AddTherapy.
 """
 type AddTherapyPayload {
   """
@@ -1880,7 +1880,7 @@ input CreateMolecularProfileInput {
 }
 
 """
-Autogenerated return type of CreateMolecularProfile
+Autogenerated return type of CreateMolecularProfile.
 """
 type CreateMolecularProfilePayload {
   """
@@ -1936,7 +1936,7 @@ input CreateVariantInput {
 }
 
 """
-Autogenerated return type of CreateVariant
+Autogenerated return type of CreateVariant.
 """
 type CreateVariantPayload {
   """
@@ -2035,7 +2035,7 @@ input DeprecateComplexMolecularProfileInput {
 }
 
 """
-Autogenerated return type of DeprecateComplexMolecularProfile
+Autogenerated return type of DeprecateComplexMolecularProfile.
 """
 type DeprecateComplexMolecularProfilePayload {
   """
@@ -2096,7 +2096,7 @@ input DeprecateVariantInput {
 }
 
 """
-Autogenerated return type of DeprecateVariant
+Autogenerated return type of DeprecateVariant.
 """
 type DeprecateVariantPayload {
   """
@@ -2235,7 +2235,7 @@ input EditUserInput {
 }
 
 """
-Autogenerated return type of EditUser
+Autogenerated return type of EditUser.
 """
 type EditUserPayload {
   """
@@ -3071,7 +3071,7 @@ input FlagEntityInput {
 }
 
 """
-Autogenerated return type of FlagEntity
+Autogenerated return type of FlagEntity.
 """
 type FlagEntityPayload {
   """
@@ -3493,7 +3493,7 @@ enum GenesSortColumns {
 """
 An ISO 8601-encoded datetime
 """
-scalar ISO8601DateTime
+scalar ISO8601DateTime @specifiedBy(url: "https://tools.ietf.org/html/rfc3339")
 
 input IntSearchInput {
   comparisonOperator: IntSearchOperator!
@@ -3842,7 +3842,7 @@ input ModerateAssertionInput {
 }
 
 """
-Autogenerated return type of ModerateAssertion
+Autogenerated return type of ModerateAssertion.
 """
 type ModerateAssertionPayload {
   """
@@ -3897,7 +3897,7 @@ input ModerateEvidenceItemInput {
 }
 
 """
-Autogenerated return type of ModerateEvidenceItem
+Autogenerated return type of ModerateEvidenceItem.
 """
 type ModerateEvidenceItemPayload {
   """
@@ -6832,7 +6832,7 @@ input RejectRevisionsInput {
 }
 
 """
-Autogenerated return type of RejectRevisions
+Autogenerated return type of RejectRevisions.
 """
 type RejectRevisionsPayload {
   """
@@ -6888,7 +6888,7 @@ input ResolveFlagInput {
 }
 
 """
-Autogenerated return type of ResolveFlag
+Autogenerated return type of ResolveFlag.
 """
 type ResolveFlagPayload {
   """
@@ -7627,7 +7627,7 @@ input SubmitAssertionInput {
 }
 
 """
-Autogenerated return type of SubmitAssertion
+Autogenerated return type of SubmitAssertion.
 """
 type SubmitAssertionPayload {
   """
@@ -7682,7 +7682,7 @@ input SubmitEvidenceItemInput {
 }
 
 """
-Autogenerated return type of SubmitEvidenceItem
+Autogenerated return type of SubmitEvidenceItem.
 """
 type SubmitEvidenceItemPayload {
   """
@@ -7735,7 +7735,7 @@ input SubmitVariantGroupInput {
 }
 
 """
-Autogenerated return type of SubmitVariantGroup
+Autogenerated return type of SubmitVariantGroup.
 """
 type SubmitVariantGroupPayload {
   """
@@ -7825,7 +7825,7 @@ input SubscribeInput {
 }
 
 """
-Autogenerated return type of Subscribe
+Autogenerated return type of Subscribe.
 """
 type SubscribePayload {
   """
@@ -7879,7 +7879,7 @@ input SuggestAssertionRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestAssertionRevision
+Autogenerated return type of SuggestAssertionRevision.
 """
 type SuggestAssertionRevisionPayload {
   """
@@ -7937,7 +7937,7 @@ input SuggestEvidenceItemRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestEvidenceItemRevision
+Autogenerated return type of SuggestEvidenceItemRevision.
 """
 type SuggestEvidenceItemRevisionPayload {
   """
@@ -7995,7 +7995,7 @@ input SuggestGeneRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestGeneRevision
+Autogenerated return type of SuggestGeneRevision.
 """
 type SuggestGeneRevisionPayload {
   """
@@ -8053,7 +8053,7 @@ input SuggestMolecularProfileRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestMolecularProfileRevision
+Autogenerated return type of SuggestMolecularProfileRevision.
 """
 type SuggestMolecularProfileRevisionPayload {
   """
@@ -8142,7 +8142,7 @@ input SuggestSourceInput {
 }
 
 """
-Autogenerated return type of SuggestSource
+Autogenerated return type of SuggestSource.
 """
 type SuggestSourcePayload {
   """
@@ -8191,7 +8191,7 @@ input SuggestVariantGroupRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestVariantGroupRevision
+Autogenerated return type of SuggestVariantGroupRevision.
 """
 type SuggestVariantGroupRevisionPayload {
   """
@@ -8249,7 +8249,7 @@ input SuggestVariantRevisionInput {
 }
 
 """
-Autogenerated return type of SuggestVariantRevision
+Autogenerated return type of SuggestVariantRevision.
 """
 type SuggestVariantRevisionPayload {
   """
@@ -8382,7 +8382,7 @@ input UnsubscribeInput {
 }
 
 """
-Autogenerated return type of Unsubscribe
+Autogenerated return type of Unsubscribe.
 """
 type UnsubscribePayload {
   """
@@ -8417,7 +8417,7 @@ input UpdateCoiInput {
 }
 
 """
-Autogenerated return type of UpdateCoi
+Autogenerated return type of UpdateCoi.
 """
 type UpdateCoiPayload {
   """
@@ -8448,7 +8448,7 @@ input UpdateNotificationStatusInput {
 }
 
 """
-Autogenerated return type of UpdateNotificationStatus
+Autogenerated return type of UpdateNotificationStatus.
 """
 type UpdateNotificationStatusPayload {
   """
@@ -8509,7 +8509,7 @@ input UpdateSourceSuggestionStatusInput {
 }
 
 """
-Autogenerated return type of UpdateSourceSuggestionStatus
+Autogenerated return type of UpdateSourceSuggestionStatus.
 """
 type UpdateSourceSuggestionStatusPayload {
   """