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updated github file paths for 9mer and 10mer
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ldhtnp committed Jan 29, 2025
1 parent bf19ff7 commit dc772fa
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions pvactools/tools/pvacview/anchor_and_helper_functions.R
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@ anchor_data[[11]] <- read.table(curl("https://raw.githubusercontent.com/griffith
## Load Mouse Anchor data
mouse_anchor_data <- list()
mouse_anchor_data[[8]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)
mouse_anchor_data[[9]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)
mouse_anchor_data[[10]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)
mouse_anchor_data[[9]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)
mouse_anchor_data[[10]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)
mouse_anchor_data[[11]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE)

#get binding affinity colors cutoffs given HLA
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