minor fixes

gustaveroussy · Jan 8, 2025 · 2c247af · 2c247af
1 parent 39308b5
commit 2c247af
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -14,6 +14,7 @@ rule all:
     params:
         explorer_directory = paths.explorer_directory,
         explorer_experiment = paths.explorer_experiment,
+        sdata_path = paths.sdata_path,
     shell:
         """
         echo 🎉 Successfully run sopa

diff --git a/workflow/utils.py b/workflow/utils.py
@@ -204,8 +204,7 @@ def gene_column(self):
             return self.config["segmentation"]["baysor"]["config"]["data"]["gene"]
         elif "comseg" in self.config["segmentation"]:
             return self.config["segmentation"]["comseg"]["config"]["gene_column"]
-        else:
-            raise ValueError("No gene column found in the config")
+        return ""  # gene column not needed
 
     ### ComSeg related methods