fix_cli_typo

gustaveroussy · Jun 10, 2024 · 3c4624d · 3c4624d
1 parent b025d28
commit 3c4624d
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/sopa/cli/patchify.py b/sopa/cli/patchify.py
@@ -74,6 +74,7 @@ def baysor(
 ):
     """Prepare patches for transcript-based segmentation with baysor"""
     from sopa._constants import SopaKeys, SopaFiles
+
     from .utils import _default_boundary_dir
 
 
@@ -126,7 +127,7 @@ def comseg(
 ):
     """Prepare patches for transcript-based segmentation with ComSeg"""
 
-    from sopa._constants import SopaKeys, SopaFiles
+    from sopa._constants import SopaFiles, SopaKeys
 
     from .utils import _default_boundary_dir
 

diff --git a/sopa/cli/segmentation.py b/sopa/cli/segmentation.py
@@ -10,7 +10,6 @@
 app_segmentation = typer.Typer()
 
 
-
 @app_segmentation.command()
 def cellpose(
     sdata_path: str = typer.Argument(help=SDATA_HELPER),
@@ -195,15 +194,15 @@ def comseg(
     """Perform ComSeg segmentation. This can be done on all patches directly, or on one individual patch."""
     import json
     import logging
+    from pathlib import Path
 
     from sopa._constants import SopaFiles, SopaKeys
     from sopa.segmentation.methods import comseg_patch
 
-    from pathlib import Path
 
     from .utils import _default_boundary_dir
 
-    log = logging.getLogger(__name__)
+    log=logging.getLogger(__name__)
 
     config_name = SopaFiles.JSON_CONFIG_FILE