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update readme
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hiruna72 committed Jan 13, 2024
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Expand Up @@ -543,7 +543,7 @@ However, the user is adviced to use `--profile` (documented [here](docs/profiles
For more information please refer [base_shift and eventalignment](docs/base_shift_and_eventalignment.md) and [base_shift and reverse mapped reads](docs/base_shift_of_reverse_mapped_reads.md).

### Signal scaling
The commands `plot` and `plot_pileup` can take the argument `--sig_scale`. By providing the argument `--sig_scale znorm` or `--sig_scale medmad` the signals will be zscore or median MAD normalized respectively.
The commands `plot` and `plot_pileup` can take the argument `--sig_scale`. Provide the argument `--sig_scale znorm` to zscore normalize, `--sig_scale medmad` to median MAD normalize, and `--sig_scale scaledpA` to scale the raw signal to the pore model.


## Plot Conventions
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