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wip: rerun notebook
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@hiyama341
hiyama341 committed Oct 4, 2024
1 parent 3676d53 commit ce559fe
Showing 1 changed file with 36 additions and 36 deletions.
72 changes: 36 additions & 36 deletions notebooks/app_workflows/W1_overexpression_workflow.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -1747,143 +1747,143 @@
" <tr>\n",
" <th>0</th>\n",
" <td>pOEx-KasO_1</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_00292_amplicon</td>\n",
" <td>6043</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>pOEx-KasO_2</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_00328_amplicon</td>\n",
" <td>8089</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>pOEx-KasO_3</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_00586_amplicon</td>\n",
" <td>5866</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>pOEx-KasO_4</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_01488_amplicon</td>\n",
" <td>7549</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>pOEx-KasO_5</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02197_amplicon</td>\n",
" <td>6052</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>pOEx-KasO_6</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02209_amplicon</td>\n",
" <td>6583</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>pOEx-KasO_7</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02563_amplicon</td>\n",
" <td>5884</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>pOEx-KasO_8</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02633_amplicon</td>\n",
" <td>6043</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>pOEx-KasO_9</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02635_amplicon</td>\n",
" <td>5839</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>pOEx-KasO_10</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02637_amplicon</td>\n",
" <td>5878</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>pOEx-KasO_11</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_02662_amplicon</td>\n",
" <td>6016</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>pOEx-KasO_12</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_05992_amplicon</td>\n",
" <td>6118</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>pOEx-KasO_13</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_06337_amplicon</td>\n",
" <td>8650</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>pOEx-KasO_14</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_06422_amplicon</td>\n",
" <td>7060</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>pOEx-KasO_15</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_06907_amplicon</td>\n",
" <td>6451</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>pOEx-KasO_16</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_07531_amplicon</td>\n",
" <td>7651</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>pOEx-KasO_17</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_07744_amplicon</td>\n",
" <td>8146</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>pOEx-KasO_18</td>\n",
" <td>2024-08-26</td>\n",
" <td>2024-10-02</td>\n",
" <td>pOEX-PkasO</td>\n",
" <td>LLPMBPKK_07949_amplicon</td>\n",
" <td>7534</td>\n",
Expand All @@ -1894,24 +1894,24 @@
],
"text/plain": [
" plasmid_name date original_plasmid integration size\n",
"0 pOEx-KasO_1 2024-08-26 pOEX-PkasO LLPMBPKK_00292_amplicon 6043\n",
"1 pOEx-KasO_2 2024-08-26 pOEX-PkasO LLPMBPKK_00328_amplicon 8089\n",
"2 pOEx-KasO_3 2024-08-26 pOEX-PkasO LLPMBPKK_00586_amplicon 5866\n",
"3 pOEx-KasO_4 2024-08-26 pOEX-PkasO LLPMBPKK_01488_amplicon 7549\n",
"4 pOEx-KasO_5 2024-08-26 pOEX-PkasO LLPMBPKK_02197_amplicon 6052\n",
"5 pOEx-KasO_6 2024-08-26 pOEX-PkasO LLPMBPKK_02209_amplicon 6583\n",
"6 pOEx-KasO_7 2024-08-26 pOEX-PkasO LLPMBPKK_02563_amplicon 5884\n",
"7 pOEx-KasO_8 2024-08-26 pOEX-PkasO LLPMBPKK_02633_amplicon 6043\n",
"8 pOEx-KasO_9 2024-08-26 pOEX-PkasO LLPMBPKK_02635_amplicon 5839\n",
"9 pOEx-KasO_10 2024-08-26 pOEX-PkasO LLPMBPKK_02637_amplicon 5878\n",
"10 pOEx-KasO_11 2024-08-26 pOEX-PkasO LLPMBPKK_02662_amplicon 6016\n",
"11 pOEx-KasO_12 2024-08-26 pOEX-PkasO LLPMBPKK_05992_amplicon 6118\n",
"12 pOEx-KasO_13 2024-08-26 pOEX-PkasO LLPMBPKK_06337_amplicon 8650\n",
"13 pOEx-KasO_14 2024-08-26 pOEX-PkasO LLPMBPKK_06422_amplicon 7060\n",
"14 pOEx-KasO_15 2024-08-26 pOEX-PkasO LLPMBPKK_06907_amplicon 6451\n",
"15 pOEx-KasO_16 2024-08-26 pOEX-PkasO LLPMBPKK_07531_amplicon 7651\n",
"16 pOEx-KasO_17 2024-08-26 pOEX-PkasO LLPMBPKK_07744_amplicon 8146\n",
"17 pOEx-KasO_18 2024-08-26 pOEX-PkasO LLPMBPKK_07949_amplicon 7534"
"0 pOEx-KasO_1 2024-10-02 pOEX-PkasO LLPMBPKK_00292_amplicon 6043\n",
"1 pOEx-KasO_2 2024-10-02 pOEX-PkasO LLPMBPKK_00328_amplicon 8089\n",
"2 pOEx-KasO_3 2024-10-02 pOEX-PkasO LLPMBPKK_00586_amplicon 5866\n",
"3 pOEx-KasO_4 2024-10-02 pOEX-PkasO LLPMBPKK_01488_amplicon 7549\n",
"4 pOEx-KasO_5 2024-10-02 pOEX-PkasO LLPMBPKK_02197_amplicon 6052\n",
"5 pOEx-KasO_6 2024-10-02 pOEX-PkasO LLPMBPKK_02209_amplicon 6583\n",
"6 pOEx-KasO_7 2024-10-02 pOEX-PkasO LLPMBPKK_02563_amplicon 5884\n",
"7 pOEx-KasO_8 2024-10-02 pOEX-PkasO LLPMBPKK_02633_amplicon 6043\n",
"8 pOEx-KasO_9 2024-10-02 pOEX-PkasO LLPMBPKK_02635_amplicon 5839\n",
"9 pOEx-KasO_10 2024-10-02 pOEX-PkasO LLPMBPKK_02637_amplicon 5878\n",
"10 pOEx-KasO_11 2024-10-02 pOEX-PkasO LLPMBPKK_02662_amplicon 6016\n",
"11 pOEx-KasO_12 2024-10-02 pOEX-PkasO LLPMBPKK_05992_amplicon 6118\n",
"12 pOEx-KasO_13 2024-10-02 pOEX-PkasO LLPMBPKK_06337_amplicon 8650\n",
"13 pOEx-KasO_14 2024-10-02 pOEX-PkasO LLPMBPKK_06422_amplicon 7060\n",
"14 pOEx-KasO_15 2024-10-02 pOEX-PkasO LLPMBPKK_06907_amplicon 6451\n",
"15 pOEx-KasO_16 2024-10-02 pOEX-PkasO LLPMBPKK_07531_amplicon 7651\n",
"16 pOEx-KasO_17 2024-10-02 pOEX-PkasO LLPMBPKK_07744_amplicon 8146\n",
"17 pOEx-KasO_18 2024-10-02 pOEX-PkasO LLPMBPKK_07949_amplicon 7534"
]
},
"execution_count": 13,
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