Refact/sparse comm

.github/workflows/build-foam.yml

@@ -71,7 +71,7 @@ jobs:
     - name: Get Ginkgo checkout version
       shell: bash
       run: |
-        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z]*" > GINKGO_CHECKOUT_VERSION
+        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z\-]*" > GINKGO_CHECKOUT_VERSION
         export GINKGO_CHECKOUT_VERSION=$(cat GINKGO_CHECKOUT_VERSION)
         echo "GINKGO_CHECKOUT_VERSION=$GINKGO_CHECKOUT_VERSION" >> $GITHUB_ENV
 

.github/workflows/format-check.yml

@@ -14,3 +14,8 @@ jobs:
         clang-format-version: '13'
         check-path: '.'
         fallback-style: 'Mozilla' # optional
+    - name: check for todo fixme note
+      run: |
+        NTODOS="$(grep -r 'TODO FIXME' | wc -l)"
+        echo "Found $NTODOS TODO FIXME notes" 
+        ! grep -q -r "TODO FIXME"  

.github/workflows/integration-tests.yml

@@ -59,7 +59,7 @@ jobs:
     - name: Get Ginkgo checkout version
       shell: bash
       run: |
-        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z]*" > GINKGO_CHECKOUT_VERSION
+        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z\-]*" > GINKGO_CHECKOUT_VERSION
         export GINKGO_CHECKOUT_VERSION=$(cat GINKGO_CHECKOUT_VERSION)
         echo "GINKGO_CHECKOUT_VERSION=$GINKGO_CHECKOUT_VERSION" >> $GITHUB_ENV
 
@@ -111,7 +111,7 @@ jobs:
     - name: Get Ginkgo checkout version
       shell: bash
       run: |
-        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z]*" > GINKGO_CHECKOUT_VERSION
+        grep -A1 "set(GINKGO_CHECKOUT_VERSION" CMakeLists.txt|tail -n1|grep -o  "[0-9a-z\-]*" > GINKGO_CHECKOUT_VERSION
         export GINKGO_CHECKOUT_VERSION=$(cat GINKGO_CHECKOUT_VERSION)
         echo "GINKGO_CHECKOUT_VERSION=$GINKGO_CHECKOUT_VERSION" >> $GITHUB_ENV
 

CMakeLists.txt

@@ -37,7 +37,7 @@ if(NOT OGL_ALLOW_REFERENCE_ONLY)
 endif()
 
 set(GINKGO_CHECKOUT_VERSION
-    "4292ffdee"
+    "sparse-communicator"
     CACHE STRING "Use specific version of ginkgo")
 
 include(CheckIncludeFileCXX)
@@ -151,6 +151,7 @@ target_sources(
           BaseWrapper/lduBase/GKOlduBase.C
           BaseWrapper/CoupledLduBase/GKOCoupledLduBase.C
           HostMatrix/HostMatrix.C
+          HostMatrix/HostMatrixFreeFunctions.C
           Solver/CG/GKOCG.C
           Solver/BiCGStab/GKOBiCGStab.C
 #Solver / IR / GKOIR.C Solver / Multigrid / GKOMultigrid.C

DevicePersistent/Base/Base.C

@@ -23,7 +23,7 @@ defineTemplateTypeNameWithName(DevicePersistentBase<gko::LinOp>,
 
 // typedef needed  to avoid confusion with the comma separated template
 // arguments as macro arguments
-typedef gko::experimental::distributed::Partition<label, label> Partition;
+typedef gko::experimental::distributed::localized_partition<label> Partition;
 defineTemplateTypeNameWithName(DevicePersistentBase<Partition>,
                                "PersistentPartition");
 

DevicePersistent/Base/Base.H

@@ -86,6 +86,8 @@ private:
 
     const label verbose_;
 
+    const InitFunctor init_functor_;
+
     // This needs to be a pointer so that it can be assigned
     // during the constructor, since regIOobject needs arguments
     // to be constructed
@@ -99,7 +101,8 @@ public:
         : name_(name),
           db_(db),
           from_registry_{db.foundObject<regIOobject>(name_)},
-          verbose_(verbose)
+          verbose_(verbose),
+          init_functor_(f)
     {
         if (from_registry_) {
             word msg = "reading " + name_ + " from registry";
@@ -149,6 +152,8 @@ public:
 
     word get_name() const { return name_; }
 
+    const InitFunctor &get_init_functor() const { return init_functor_; }
+
     const objectRegistry &get_db() const { return db_; }
 
     bool get_stored() const { return from_registry_; }