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Merge pull request #26 from icanbwell/updates_loading_resource_json
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HHRE-726 updated loadResourceFromString method
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changsu-bWell authored Mar 17, 2022
2 parents 60068ad + 1f97a42 commit fac2985
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Showing 3 changed files with 8 additions and 5 deletions.
2 changes: 1 addition & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,6 @@ COPY ./src/ /helix.pipelines/src/

## skip running tests since it requires a fhir server
RUN mvn -Dmaven.test.skip package && \
cp ./target/bsights-engine-spark-1.0.2.jar /opt/spark/jars/
cp ./target/bsights-engine-spark-1.0.3.jar /opt/spark/jars/

# USER 1001
2 changes: 1 addition & 1 deletion pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@

<groupId>com.bwell</groupId>
<artifactId>bsights-engine-spark</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>

<properties>
<maven.compiler.source>8</maven.compiler.source>
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9 changes: 6 additions & 3 deletions src/main/java/com/bwell/services/domain/ResourceLoader.java
Original file line number Diff line number Diff line change
Expand Up @@ -53,6 +53,8 @@ public IBaseBundle loadResourceFromString(String resourceJson) {
// get the contained array
List<Resource> contained = ((Patient) resource).getContained();

resourceJson = resourceJson.trim();

// separate contained resources
String separatedRawResources = separateContainedResources(resourceJson, contained.size());

Expand Down Expand Up @@ -102,12 +104,12 @@ private String separateContainedResources(String rawContainedJson, int numberOfC
}
}
else {
resourceStr = rawContainedJson.substring(indexLocations[i], rawContainedJson.length() - 3);
resourceStr = rawContainedJson.substring(indexLocations[i], rawContainedJson.length() - 2);
// trim
resourceStr = resourceStr.trim();
}

separatedContainedResourcesJson += (resourceStr+"\r\n");
separatedContainedResourcesJson += ("\r\n" + resourceStr);
}

return separatedContainedResourcesJson;
Expand All @@ -123,7 +125,8 @@ private String bundleSeparateResourcesJson(String rawSeparatedJson) {
}

// wrap in a bundle
separatedResourcesBundleJson = "{\"resourceType\":\"Bundle\", \"id\":\"" + UUID.randomUUID().toString() + "\", \"entry\":[" + separatedResourcesBundleJson + "]}";
separatedResourcesBundleJson = "{\"resourceType\":\"Bundle\", \"entry\":[" + separatedResourcesBundleJson + "]}";

return separatedResourcesBundleJson;
}
}

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