BamExtract: Fixed nightly test

imgag · Dec 7, 2023 · 091748c · 091748c
1 parent f92d2aa
commit 091748c
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/src/GSvar/IGVSession.cpp b/src/GSvar/IGVSession.cpp
@@ -144,7 +144,7 @@ bool IGVSession::isIgvRunning()
 	commands << IgvWorkerCommand{-1, "echo running"};
 
 	//start command
-	IGVCommandWorker* command_worker = new IGVCommandWorker(igv_data_, commands, 1500);
+	IGVCommandWorker* command_worker = new IGVCommandWorker(igv_data_, commands, 2000);
 	command_worker->setAutoDelete(false);
     execution_pool_.start(command_worker);
 

diff --git a/src/GSvar/MainWindow.cpp b/src/GSvar/MainWindow.cpp
@@ -6171,7 +6171,7 @@ void MainWindow::on_actionSampleAncestry_triggered()
 
 void MainWindow::on_actionAnalysisStatus_triggered()
 {
-	TabType type = TabType::ANANLYSIS_STATUS;
+	TabType type = TabType::ANALYSIS_STATUS;
 	if (focusTab(type, "Analysis status")) return;
 
 	//open new

diff --git a/src/GSvar/MainWindow.h b/src/GSvar/MainWindow.h
@@ -29,7 +29,7 @@ enum class TabType
 	GENE = 5,
 	VARIANT = 6,
 	SAMPLE_SEARCH = 101,
-	ANANLYSIS_STATUS = 102
+	ANALYSIS_STATUS = 102
 };
 
 ///Main window class

diff --git a/src/tools-TEST/BamExtract_Test.h b/src/tools-TEST/BamExtract_Test.h
@@ -12,9 +12,9 @@ private slots:
 		if (ref_file=="") SKIP("Test needs the reference genome!");
 
 		EXECUTE("BamExtract", "-in " + TESTDATA("../cppNGS-TEST/data_in/panel.bam") + " -ids " + TESTDATA("data_in/BamExtract_ids.txt") + " -out out/BamExtract_out1.bam -out2 out/BamExtract_out2.bam");
+		COMPARE_GZ_FILES("out/BamExtract_out1.bam", TESTDATA("data_out/BamExtract_out1.bam"));
 		IS_TRUE(QFile::exists("out/BamExtract_out2.bam"));
-		COMPARE_FILES("out/BamExtract_out1.bam", TESTDATA("data_out/BamExtract_out1.bam"));
-		COMPARE_FILES("out/BamExtract_Test_line11.log", TESTDATA("data_out/BamCleanHaloplex_out1.log"));
+		COMPARE_FILES("out/BamExtract_Test_line14.log", TESTDATA("data_out/BamExtract_out1.log"));
 	}
 
 };