GSvar: added CNV reference correlation to sample table in run tab

imgag · Nov 15, 2023 · 87f94ba · 87f94ba
1 parent f7d63af
commit 87f94ba
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Showing 4 changed files with 20 additions and 20 deletions.
diff --git a/src/GSvar/GSvar.qrc b/src/GSvar/GSvar.qrc
@@ -125,5 +125,7 @@
         <file>Icons/Virus.png</file>
         <file>Icons/IGV_active.png</file>
         <file>Resources/CCR_supported_genes.txt</file>
-        <file>Resources/CCR80_GRCh38.bed</file>    </qresource>
+        <file>Resources/CCR80_GRCh38.bed</file>
+        <file>Icons/NovaSeqX.png</file>
+    </qresource>
 </RCC>
diff --git a/src/GSvar/Icons/NovaSeqX.png b/src/GSvar/Icons/NovaSeqX.png
diff --git a/src/GSvar/SequencingRunWidget.cpp b/src/GSvar/SequencingRunWidget.cpp
@@ -30,7 +30,7 @@ SequencingRunWidget::SequencingRunWidget(QWidget* parent, QString run_id)
 	connect(ui_->email_btn, SIGNAL(clicked(bool)), this, SLOT(sendStatusEmail()));
 	connect(ui_->mid_check_btn, SIGNAL(clicked(bool)), this, SLOT(checkMids()));
 	connect(ui_->samples, SIGNAL(rowDoubleClicked(int)), this, SLOT(openSampleTab(int)));
-	connect(ui_->b_export_sample_sheet, SIGNAL(clicked(bool)), this, SLOT(exportSampleSheet()));
+	connect(ui_->novaseqx_samplesheet_btn, SIGNAL(clicked(bool)), this, SLOT(exportSampleSheet()));
 	QAction* action = new QAction(QIcon(":/Icons/NGSD_sample.png"), "Open processed sample tab", this);
 	ui_->samples->addAction(action);
 	connect(action, SIGNAL(triggered(bool)), this, SLOT(openSelectedSampleTabs()));
@@ -81,7 +81,7 @@ void SequencingRunWidget::updateGUI()
 		ui_->backup->setText(query.value("backup_done").toString()=="1" ? "yes" : "no");
 
 		//#### activate SampleSheet ####
-		ui_->b_export_sample_sheet->setEnabled((query.value("d_type").toString() == "NovaSeqXPlus") || (query.value("d_type").toString() == "NovaSeqX"));
+		ui_->novaseqx_samplesheet_btn->setEnabled((query.value("d_type").toString() == "NovaSeqXPlus") || (query.value("d_type").toString() == "NovaSeqX"));
 
 		//#### run quality ####
 		updateReadQualityTable();
@@ -528,6 +528,7 @@ void SequencingRunWidget::setQCMetricAccessions(const QSet<QString>& sample_type
 	if (sample_types.contains("DNA") || sample_types.contains("DNA (amplicon)") || sample_types.contains("DNA (native)"))
 	{
 		qc_metric_accessions_ << "QC:2000113"; // CNV count
+		qc_metric_accessions_ << "QC:2000114"; // CNV coverage profile correlation
 	}
 
 	if (sample_types.contains("RNA"))

diff --git a/src/GSvar/SequencingRunWidget.ui b/src/GSvar/SequencingRunWidget.ui
@@ -92,6 +92,20 @@
            </property>
           </widget>
          </item>
+         <item>
+          <widget class="QToolButton" name="novaseqx_samplesheet_btn">
+           <property name="toolTip">
+            <string>Export NovaSeq X sample sheet</string>
+           </property>
+           <property name="text">
+            <string>...</string>
+           </property>
+           <property name="icon">
+            <iconset resource="GSvar.qrc">
+             <normaloff>:/Icons/NovaSeqX.png</normaloff>:/Icons/NovaSeqX.png</iconset>
+           </property>
+          </widget>
+         </item>
          <item>
           <spacer name="horizontalSpacer_2">
            <property name="orientation">
@@ -554,23 +568,6 @@
          </property>
         </widget>
        </item>
-       <item row="0" column="9">
-        <widget class="QPushButton" name="b_export_sample_sheet">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="toolTip">
-          <string>Export SampleSheet for illumina NovaSeq X (Plus)</string>
-         </property>
-         <property name="text">
-          <string/>
-         </property>
-         <property name="icon">
-          <iconset resource="GSvar.qrc">
-           <normaloff>:/Icons/Table.png</normaloff>:/Icons/Table.png</iconset>
-         </property>
-        </widget>
-       </item>
       </layout>
      </widget>
     </widget>