update prints and run docs

iqraAmin · Nov 7, 2024 · 7f70a92 · 7f70a92
1 parent 4e4e2dd
commit 7f70a92
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/R/convenience_xenium.R b/R/convenience_xenium.R
@@ -487,7 +487,8 @@ setMethod(
                     path = metadata_path,
                     verbose = verbose
                 )
-                g <- setGiotto(g, cx)
+                # verbose = FALSE to silence warning that meta is already generated
+                g <- setGiotto(g, cx, verbose = FALSE)
             }
 
 
@@ -553,12 +554,15 @@ setMethod(
             }
 
             # centroids
+            vmsg(.v = verbose, "calculating centroids")
             spat_units_to_calc <- list_spatial_info_names(g)
             g <- addSpatialCentroidLocations(g, 
                 poly_info = spat_units_to_calc,
                 provenance = as.list(spat_units_to_calc),
                 verbose = FALSE
             )
+
+            vmsg(.v = verbose, "done")
 
             return(g)
         }

diff --git a/man/createGiottoXeniumObject.Rd b/man/createGiottoXeniumObject.Rd