Add ionospheric correction (#185)

* Add tropospheric correction module to the workflow

* correct datetime datatype and logger message

* remove type=str from argparse

Co-authored-by: Scott Staniewicz <[email protected]>

* remove type=str from argparse

* reformatting

* use dataclass instead of dict

* add pyaps3 to requirements

* change opera-utils version

* correct typos and use enum instead of literal

* change warn to warning

* fix `warn` in `displacement.py

* add the main function to __all__

* Apply suggestions from code review

Co-authored-by: Scott Staniewicz <[email protected]>

* add suggestions from review

* restructure docstring for dataclass

* remove repeated line

Co-authored-by: Scott Staniewicz <[email protected]>

* correct typo

Co-authored-by: Scott Staniewicz <[email protected]>

* change bounds to SNWE

* [pre-commit.ci] pre-commit autoupdate (#178)

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.7 → v0.1.8](astral-sh/ruff-pre-commit@v0.1.7...v0.1.8)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* add `overwrite` option for `atomic_output` (#179)

* add option for overwriting in `atomic_output`

* return the outputs from snaphu unwrap

* Use `conncomp.tif` for connected component rasters (#181)

* use GTiff instead of ENVI for conncomps

* add changelog

* fix unw.conncomp test check

* [pre-commit.ci] pre-commit autoupdate (#182)

* Expose `--no-unwrap` in `dolphin config` to skip unwrapping (#183)

* add ionosphere correction

* transform coordinates using rasterio

Co-authored-by: Scott Staniewicz <[email protected]>

* use rasterio and griddata

* skip corrections if inputs are not provided

* Apply suggestions from code review

Co-authored-by: Scott Staniewicz <[email protected]>

* show function outputs more clear

* add comment about num_map

* use tuple instead of list

* use both str and ENUM in dataclass

* use better annotation

* Apply suggestions from code review

Co-authored-by: Scott Staniewicz <[email protected]>

* remove assert lines

* fix my shuffling and missing import from suggestion

* move prepare_geomtery to displacement.py

* add test for iono and tropo in workflow

* add atmospheric correction test data

* pre-commit correction

* remove iono_date_fmt from config file

* turn on unwrapping in config to test tropo/iono

* attempt to fix static layers test data

* turn off for now

---------

Co-authored-by: Sara Mirzaee <[email protected]>
Co-authored-by: Scott Staniewicz <[email protected]>
Co-authored-by: Scott Staniewicz <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

src/dolphin/_types.py

@@ -58,7 +58,7 @@ class Bbox(NamedTuple):
 DateOrDatetime = Union[datetime.datetime, datetime.date]
 
 
-class TropoModel(Enum):
+class TropoModel(str, Enum):
     """Enumeration representing different tropospheric models."""
 
     ERA5 = "ERA5"
@@ -71,7 +71,7 @@ class TropoModel(Enum):
     GMAO = "GMAO"
 
 
-class TropoType(Enum):
+class TropoType(str, Enum):
     """Type of tropospheric delay."""
 
     WET = "wet"

src/dolphin/atmosphere/__init__.py

@@ -1,3 +1,4 @@
 """Atmospheric corrections."""
 
 from .troposphere import *  # noqa
+from .ionosphere import *  # noqa