Aqua + typos CI

jClugstor · Dec 2, 2023 · 0178fc4 · 0178fc4
1 parent f674f20
commit 0178fc4
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Showing 6 changed files with 38 additions and 6 deletions.
diff --git a/.github/workflows/SpellCheck.yml b/.github/workflows/SpellCheck.yml
@@ -0,0 +1,13 @@
+name: Spell Check
+
+on: [pull_request]
+
+jobs:
+  typos-check:
+    name: Spell Check with Typos
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Actions Repository
+        uses: actions/checkout@v3
+      - name: Check spelling
+        uses: crate-ci/[email protected] 
diff --git a/.typos.toml b/.typos.toml
@@ -0,0 +1,3 @@
+[default.extend-words]
+datas = "datas"
+Strat = "Strat"
diff --git a/Project.toml b/Project.toml
@@ -12,7 +12,6 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
 NLopt = "76087f3c-5699-56af-9a33-bf431cd00edd"
 Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba"
 OptimizationBBO = "3e6eede4-6085-4f62-9a71-46d9bc1eb92b"
-OptimizationMOI = "fd9f6733-72f4-499f-8506-86b2bdd0dea1"
 OptimizationNLopt = "4e6fcdb7-1186-4e1f-a706-475e75c168bb"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
@@ -21,25 +20,29 @@ SciMLExpectations = "afe9f18d-7609-4d0e-b7b7-af0cb72b8ea8"
 Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
 
 [compat]
+Aqua = "0.8"
 DifferentialEquations = "7"
 Distributions = "0.25"
 GlobalSensitivity = "2"
+LinearAlgebra = "1"
 ModelingToolkit = "8"
 NLopt = "0.6, 1"
 Optimization = "3"
 OptimizationBBO = "0.1"
-OptimizationMOI = "0.1"
 OptimizationNLopt = "0.1"
 Plots = "1"
 Reexport = "1"
+SafeTestsets = "0.1"
 SciMLBase = "1.93.1, 2"
 SciMLExpectations = "2"
+Test = "1"
 Turing = "0.22, 0.23, 0.24"
 julia = "1.6"
 
 [extras]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["SafeTestsets", "Test"]
+test = ["Aqua", "SafeTestsets", "Test"]
diff --git a/docs/src/scenarios/scenario3.md b/docs/src/scenarios/scenario3.md
@@ -196,8 +196,8 @@ plot(sold)
 
 ```julia
 sols = []
-u_detecs = 0:0.1:1
-for x in u_detecs
+u_detects = 0:0.1:1
+for x in u_detects
     probd = remake(probd, p = [u_hosp => x])
     sold = solve(probd; saveat = sold.t)
     push!(sols, sold)

diff --git a/test/qa.jl b/test/qa.jl
@@ -0,0 +1,12 @@
+using EasyModelAnalysis, Aqua
+@testset "Aqua" begin
+    Aqua.find_persistent_tasks_deps(EasyModelAnalysis)
+    Aqua.test_ambiguities(EasyModelAnalysis, recursive = false)
+    Aqua.test_deps_compat(EasyModelAnalysis)
+    Aqua.test_piracies(EasyModelAnalysis,
+        treat_as_own = [])
+    Aqua.test_project_extras(EasyModelAnalysis)
+    Aqua.test_stale_deps(EasyModelAnalysis)
+    Aqua.test_unbound_args(EasyModelAnalysis)
+    Aqua.test_undefined_exports(EasyModelAnalysis, broken = true)
+end
diff --git a/test/runtests.jl b/test/runtests.jl
@@ -4,13 +4,14 @@ const GROUP = get(ENV, "GROUP", "All")
 
 @time begin
     if GROUP == "All" || GROUP == "Core"
+        @time @safetestset "Quality Assurance" include("qa.jl")
         @time @safetestset "Basic Tests" include("basics.jl")
         @time @safetestset "Sensitivity Tests" include("sensitivity.jl")
         VERSION >= v"1.9" && @time @safetestset "Ensemble Tests" include("ensemble.jl")
         @time @safetestset "Threshold Tests" include("threshold.jl")
         @time @safetestset "Example Tests" include("examples.jl")
     end
-    
+
     if GROUP == "All" || GROUP == "Datafit"
         @time @safetestset "Datafit Tests" include("datafit.jl")
     end