Fix typos in tutorials (#450)

jaxleyverse · Oct 18, 2024 · d73202b · d73202b
1 parent 3cdb490
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diff --git a/docs/tutorials/03_setting_parameters.ipynb b/docs/tutorials/03_setting_parameters.ipynb
@@ -2,15 +2,15 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "806f72b5-61c5-4415-ae97-87a6b07a73e3",
+   "id": "cfacf4c0",
    "metadata": {},
    "source": [
     "# Setting parameters and initial states"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "14b6336e-5b07-464e-885c-0e63bb746857",
+   "id": "e646adc7",
    "metadata": {},
    "source": [
     "In this tutorial, you will learn how to:\n",
@@ -36,7 +36,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "20a19399-cff4-45e3-b0b5-d2d1d5d877ec",
+   "id": "4ba601ce",
    "metadata": {},
    "source": [
     "In the previous two tutorials, you learned how to build single cells or networks and how to simulate them. In this tutorial, you will learn how to change parameters of such simulations.\n",
@@ -47,7 +47,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "deb594f4",
+   "id": "701218e5",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -62,7 +62,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "f5cda6ff",
+   "id": "323525f1",
    "metadata": {},
    "source": [
     "### Preface: Building the cell or network\n",
@@ -73,7 +73,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "9819bbf4",
+   "id": "8b1f5440",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -87,7 +87,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "634ac32b-4b55-4dda-a715-2f6d050039fc",
+   "id": "73e22784",
    "metadata": {},
    "source": [
     "### Setting parameters in `Jaxley`\n",
@@ -110,7 +110,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "39b96beb-4c0c-40ae-8418-c8d6eb76bcee",
+   "id": "22c4984e",
    "metadata": {},
    "source": [
     "### Setting morphological parameters\n",
@@ -125,7 +125,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "5424211f-369d-4d82-82da-e7abc6d34c8d",
+   "id": "c4f7365f",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -136,7 +136,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "f9f052e9-22be-403f-9c44-73ba36d5802f",
+   "id": "1bd28efb",
    "metadata": {},
    "outputs": [
     {
@@ -244,7 +244,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "4504d01e-8fe0-46b7-907f-e225b77280d6",
+   "id": "1ac45b6e",
    "metadata": {},
    "source": [
     "### Setting channel parameters\n",
@@ -255,18 +255,18 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "2614c220-fe75-47cf-96dd-6961da9ac746",
+   "id": "385093fb",
    "metadata": {},
    "outputs": [],
    "source": [
     "cell.insert(Na())\n",
-    "cell.branch(1).comp(0).set(\"Na_gNa\", 0.1)  # mS/cm^2"
+    "cell.branch(1).comp(0).set(\"Na_gNa\", 0.1)  # S/cm^2"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "f5940f1d-202d-4a1b-b39c-10cf3c4143e5",
+   "id": "ae8c4aa4",
    "metadata": {},
    "outputs": [
     {
@@ -404,7 +404,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "b0ee6691-4d0f-4650-9f69-9221b13f0128",
+   "id": "59595647",
    "metadata": {},
    "source": [
     "### Setting synaptic parameters\n",
@@ -415,7 +415,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "08375bd2-fde1-47b6-814c-77e1b1065990",
+   "id": "3364da0e",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -432,7 +432,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "712a57ec-e662-40f3-bb43-30422a0546a0",
+   "id": "1a7a4067",
    "metadata": {},
    "source": [
     "You can inspect synaptic parameters and states with `net.edges`:"
@@ -441,7 +441,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "7571ce65-ced9-43e4-a9d2-7fe0cfacb972",
+   "id": "c7722339",
    "metadata": {},
    "outputs": [
     {
@@ -535,15 +535,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "00c7080d-3b71-43b0-84d5-eff87ad3db79",
+   "id": "c051c725",
    "metadata": {},
    "source": [
     "### Setting initial states"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "c7c970f1-0359-4106-802f-e06e941bfe0f",
+   "id": "7ff2543a",
    "metadata": {},
    "source": [
     "Finally, you can also set initial states. These include the initial voltage `v` and the states of all channels and synapses (which must be defined in `self.channel_states` of the channel. For example:"
@@ -552,7 +552,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "86544366-6790-4b0e-8799-251769a63b9e",
+   "id": "e9023c42",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -563,7 +563,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "f8509703-7aff-4836-979e-7e5d7f8bdaf5",
+   "id": "e0bf8439",
    "metadata": {},
    "outputs": [
     {
@@ -778,7 +778,7 @@
   {
    "cell_type": "code",
    "execution_count": 11,
-   "id": "94564463-a5bb-443f-94e4-9bd46ebc9121",
+   "id": "dc382312",
    "metadata": {},
    "outputs": [
     {
@@ -872,15 +872,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "95003e15-a8e4-47bc-89a5-677709df86ca",
+   "id": "7b716211",
    "metadata": {},
    "source": [
     "### Summary"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "7bec5ecb-ba6a-49da-b75b-336821fd849b",
+   "id": "6273613c",
    "metadata": {},
    "source": [
     "You can now modify parameters of your `Jaxley` simulation. In [the next tutorial](https://jaxleyverse.github.io/jaxley/latest/tutorial/04_jit_and_vmap/), you will learn how to make parameter sweeps (or stimulus sweeps) fast with jit-compilation and GPU parallelization."