add CEDAR and ARCHS4 and overhaul and simplify code base

[kweav]

This pull request:

• removes the dependency on alldataFilesEditor.Rmd to add or edit entries in the tables (this file is now deprecated/unnecessary -- will remove in a later push)
• ports over previously added or edited entries to their respective files (e.g., a resource ISIC Archive now in resourceTable.Rmd) and CaPTk, an imaging tool, now in imagingTable.Rmd)
• adds CEDAR and ARCHS4 as ITCR funded resources in resourceTable.Rmd
• corrected CGC entry within multiTable.Rmd. Two of its Data Provided were not comma separated and therefore were not linked in the tables. Now they should be comma separated and ICGC linked.
• added a script with two functions to handle formatting of tables (scripts/format-tables.R). Sourced this file and called its functions within each sub-table Rmarkdown (clinicalTable.Rmd, imagingTable.Rmd, multiTable.Rmd, omicsTable.Rmd, and resourceTable.Rmd).
• no longer requires .csv files to be written for each formatted/modified sub-table. The variables are now inherited within allTables.Rmd.

Further work will improve documentation to explain what is happening and what steps should be followed in order to add or edit additional tools/resources. There may also be further reduction of I/O, regarding the resource identifier file, but not sure about this.

[github-actions]

No spelling errors! 🎉
Comment updated at 2024-02-08 with changes from 6f77e44

[github-actions]

No broken URLs detected! 🎉
Comment updated at 2024-02-08 with changes from 6f77e44

[kweav]

added PCDC and documentation. No further reduction in I/O

[github-actions]

Re-rendered previews from the latest commit: See preview of website here

Updated at 2024-02-08 with changes from 6f77e44

[carriewright11]

Looks great! I just have some documentation minor edits. But I was wondering if you were saying in the readme that the table with all tools doesn't show data? "The rows of these tables are joined together to form the all tools table (resources are not included in this)" In the current version it seems to - was this a change you made? https://jhudatascience.org/ITCR_Tables/allTables.html

[carriewright11]

I think once we add "data" to the relevant file names this should be good to go :) (unless you did already and I missed that)