Will it let me read the file?

jhudsl · Jul 15, 2024 · 4f71660 · 4f71660
1 parent 85cb12f
commit 4f71660
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diff --git a/base_ottr/Dockerfile b/base_ottr/Dockerfile
@@ -8,7 +8,7 @@ COPY github_package_list.tsv .
 RUN --mount=type=secret,id=github_token \
   Rscript install_github.R \
   --packages github_package_list.tsv \
-  --token $(cat /run/secrets/github_token)
+  --token /run/secrets/github_token
 
 WORKDIR /rocker-build/
 

diff --git a/base_ottr/install_github.R b/base_ottr/install_github.R
@@ -30,10 +30,10 @@ option_list <- list(
 # Parse options
 opt <- parse_args(OptionParser(option_list = option_list))
 
-message(as.character(opt$tokens))
-
 # Read in the token
-token <- as.character(opt$tokens)
+token <- readLines(as.character(opt$tokens)[1])
+
+message(token)
 
 # Reset GITHUB PAT to be token
 # Sys.unsetenv("GITHUB_PAT")