GitHub - jimmymathews/tda-pam50-data

Data supporting the figures in our Nature Partner Journal (NPJ) Breast Cancer paper:

Robust and Interpretable PAM50 Reclassification Exhibits Survival Advantage for Myoepithelial and Immune Phenotypes

James C Mathews, Saad Nadeem, Arnold J Levine, Maryam Pouryahya, Joseph O Deasy, Allen Tannenbaum.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
README.md		README.md
gtex_mapper_on_pam50_location_key.png		gtex_mapper_on_pam50_location_key.png
gtex_pam50_zscores_grouped_by_mapper_on_pam50.csv		gtex_pam50_zscores_grouped_by_mapper_on_pam50.csv
gtex_santagata_markers_zscores_grouped_by_mapper_on_pam50.csv		gtex_santagata_markers_zscores_grouped_by_mapper_on_pam50.csv
metabric_mapper_on_pam50_location_key.png		metabric_mapper_on_pam50_location_key.png
metabric_pam50_zscores_grouped_by_mapper_on_pam50.csv		metabric_pam50_zscores_grouped_by_mapper_on_pam50.csv
metabric_pam50_zscores_pam50_vs_tdasignatures.csv		metabric_pam50_zscores_pam50_vs_tdasignatures.csv
metabric_survival_pam50_vs_tdasignatures.csv		metabric_survival_pam50_vs_tdasignatures.csv
pam50_gene_groups.csv		pam50_gene_groups.csv
tcga_recurrence_pam50_vs_tdasignatures.csv		tcga_recurrence_pam50_vs_tdasignatures.csv

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