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# **Hands-on course, Institute of Biophysics of the Czech Academy of Sciences, November 2023, Brno**

This readme was created by Jiří Vorel ([email protected]).
This readme was created by Jiří Vorel ([email protected])

The course was lectured by Jiří Vorel and Roman Lentovyč.
The course was lectured by Jiří Vorel and Roman Leontovyč

<p align="center"><img src="./figs/01_logos.jpg"></p>

# Table of contents
* [Introduction](#introduction)
* [Prerequisites](#prerequisites)
* [Aims and limitations](#aims-and-limitations)
* [Dedicated hardware](#dedicated-hardware)
* [Useful links](#useful-links)

# Introduction
This tutorial, in the brief form of a hands-on course, shows how to process sequencing data at [MetaCentrum NGI](https://www.metacentrum.cz/en/index.html) (National Grid Infrastructure).

This tutorial, in the brief form of a hands-on course, shows how to process and examine sequencing data at [MetaCentrum NGI](https://www.metacentrum.cz/en/index.html) (National Grid Infrastructure).

## Prerequisites

To get the full potential of this course, each attendant should be (or should has):
To get the full potential of this course, each attendant should be (or should has):
- **be a registered user of MetaCentrum** (due to the process involving application approval and propagation of a new account, it is necessary to apply for an account no later than a day before the course)
- **know its username and password** (which were created during the application process)
- **has a laptop with a working internet connection**
- **be able to log in to the remote server (via ssh protocol)**

## Aims and limitations

In this course...

## Dedicated hardware

## Useful links
- [MetaCentrum terms and conditions](https://www.metacentrum.cz/en/about/rules/)
- [Registration form](https://metavo.metacentrum.cz/en/application/index.html) - MetaCentrum is intended only for employees and students of research organisations in the Czech Republic and for research purposes only.
- [Registration form](https://metavo.metacentrum.cz/en/application/index.html)

> [!NOTE]
> MetaCentrum is intended only for employees and students of research organisations in the Czech Republic and for research purposes only!
- [Documentation](https://docs.metacentrum.cz/)
- [Monitoring page](https://metavo.metacentrum.cz/en/index.html)
- [User support contact](https://docs.metacentrum.cz/contact/)
- MetaCentrum is an activity of the [CESNET](https://www.cesnet.cz/?lang=en) association, part of the [e-INFRA CZ](https://www.e-infra.cz/en) research and development e-infrastructure













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