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Update README.md
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jirivorel authored Nov 30, 2023
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Expand Up @@ -74,10 +74,10 @@ The following data and software tools will be used during the course:
- Illumina paired-end reads (NCBI SRA accession number: [SRX20115911](https://www.ncbi.nlm.nih.gov/sra/SRX20115911[accn])).
- Oxford Nanopore reads (NCBI SRA accession number: [SRX20115912](https://www.ncbi.nlm.nih.gov/sra/SRX20115912[accn])).
- [NCBI SRA Toolkit](https://github.com/ncbi/sra-tools) for downloading sequencing data.
- [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/) for quality control of Illumina reads
- [NanoPlot](https://github.com/wdecoster/NanoPlot) for quality control of Oxford Nanopore reads
- [Unicycler](https://github.com/rrwick/Unicycler) for genome assembly
- [QUAST](https://quast.sourceforge.net/) for assembly quality assessment
- [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/) for quality control of Illumina reads.
- [NanoPlot](https://github.com/wdecoster/NanoPlot) for quality control of Oxford Nanopore reads.
- [Unicycler](https://github.com/rrwick/Unicycler) for genome assembly.
- [QUAST](https://quast.sourceforge.net/) for assembly quality assessment.

## Useful links
- [MetaCentrum terms and conditions](https://docs.metacentrum.cz/access/terms/)
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