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No motifs found #8

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SalimMegat opened this issue Feb 7, 2023 · 1 comment
Open

No motifs found #8

SalimMegat opened this issue Feb 7, 2023 · 1 comment

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@SalimMegat
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Hi,

I have tried to run modisco-lite on some of my sequences but unofortunately I do not get any motifs back.
I have tried to generated a one-hot encoded sequences and numpy array from both the sequences and the hyp important score from my gkm-svm run but I got no results.
Attached you'll find both npy files that I used as input.
Also I used the fasta and score generated on the TF-modisco repo to make numpy array for modisco-lite and I also do not get any significant motif back. Am I doing something wrong ?
Many thanks !

Best,

Salim.
Archive.zip
@jmschrei
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Can you provide the command you're using to run it?

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@jmschrei @SalimMegat