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21 Open 18 Closed
21 Open 18 Closed
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Issues list

Question about modisco meme result
#58 opened Jan 2, 2025 by Yurun-Li-1024
1
Generate basic report with out meme comparison
#54 opened Aug 6, 2024 by kaillahs
13
necessity for the calling of use("pdf")
#53 opened Jul 23, 2024 by ruochiz
5
Prediction from low peak quality (qval)
#49 opened Apr 10, 2024 by arodel21
2
MergeMotifsAcrossRuns.ipynb should account for indexes with respect to --window
#48 opened Mar 4, 2024 by KnightAsterial
How are high absolute attribution scores defined?
#47 opened Feb 16, 2024 by FelixWaern
1
--verbose is still rather taciturn
#45 opened Jan 29, 2024 by mmtrebuchet
1
modisco meme command does not return trimmed motifs and no negative patterns but only positive ones
#44 opened Nov 10, 2023 by ThorbenMaa
3
Center peak regions at summit in modisco seqlet-bed
#43 opened Oct 6, 2023 by austintwang
1
example_idx doesnt trace back to original contribution scores
#39 opened Sep 19, 2023 by mlweilert
2
Need to raise an error if the attr or ohe files don't end in .npz or .npy
#38 opened Sep 1, 2023 by jmschrei
Errors from MEME text parser leads to pandas.errors.EmptyDataError: No columns to parse from file
#37 opened Aug 25, 2023 by anupamajha1
2
Add Unit tests
#34 opened Jun 9, 2023 by bytewife
Add negative pattern implementation for meme subcommand
#30 opened Jun 1, 2023 by bytewife
1
motifs.html report can be confusing
#26 opened May 18, 2023 by janewangsmile
version for RNA sequence
#25 opened May 18, 2023 by janewangsmile
Access motifs
#21 opened May 8, 2023 by samuel-g-bates
Reset seqlet coordinates with respect to "--window"
#20 opened May 3, 2023 by jvierstra
1
Add Linting Github Action
#19 opened Apr 21, 2023 by bytewife
1
Could not construct partition: Cannot accept NaN weights.
#12 opened Mar 30, 2023 by avantikalal
1
No motifs found
#8 opened Feb 7, 2023 by SalimMegat
1
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