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Front #2

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Fixed bug in calculation of epsilon in front branch, need to update master

johnryantaylor and others added 30 commits November 1, 2017 17:27
removed call to les_chan_th (from AMD model branch in development)
…tic in saving stats, and with the subgrid model.

1. ume(j-1) mismatch when subtracting background strain.
2. dyf(Nyp+1) is now communicated down to be consistent across processes, rather than locally extrapolating.
3. CSij2 was not defined on Nyp+1 which is needed for computing temp in the sgs model, requiring some communicating down processors again.
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