justinjao · justinjao · Aug 31, 2023
diff --git a/public/acbc_mskcc_2015/LICENSE b/public/acbc_mskcc_2015/LICENSE
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+The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license.
diff --git a/public/acbc_mskcc_2015/case_lists/cases_all.txt b/public/acbc_mskcc_2015/case_lists/cases_all.txt
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+cancer_study_identifier: acbc_mskcc_2015
+stable_id: acbc_mskcc_2015_all
+case_list_name: All samples
+case_list_description: All samples (12 samples)
+case_list_category: all_cases_in_study
+case_list_ids: AdCC2T	AdCC3T	AdCC8T	AdCC1T	AdCC11T	AdCC10T	AdCC6T	AdCC5T	AdCC32T	AdCC4T	AdCC9T	AdCC12T
diff --git a/public/acbc_mskcc_2015/case_lists/cases_cna.txt b/public/acbc_mskcc_2015/case_lists/cases_cna.txt
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+cancer_study_identifier: acbc_mskcc_2015
+stable_id: acbc_mskcc_2015_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (12 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: AdCC2T	AdCC3T	AdCC8T	AdCC1T	AdCC11T	AdCC10T	AdCC6T	AdCC5T	AdCC32T	AdCC4T	AdCC9T	AdCC12T
diff --git a/public/acbc_mskcc_2015/case_lists/cases_cnaseq.txt b/public/acbc_mskcc_2015/case_lists/cases_cnaseq.txt
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+cancer_study_identifier: acbc_mskcc_2015
+stable_id: acbc_mskcc_2015_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (12 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: AdCC10T	AdCC3T	AdCC8T	AdCC1T	AdCC11T	AdCC2T	AdCC6T	AdCC5T	AdCC32T	AdCC4T	AdCC9T	AdCC12T
diff --git a/public/acbc_mskcc_2015/case_lists/cases_sequenced.txt b/public/acbc_mskcc_2015/case_lists/cases_sequenced.txt
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+cancer_study_identifier: acbc_mskcc_2015
+stable_id: acbc_mskcc_2015_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (12 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: AdCC10T	AdCC3T	AdCC8T	AdCC1T	AdCC11T	AdCC2T	AdCC6T	AdCC5T	AdCC32T	AdCC4T	AdCC9T	AdCC12T
diff --git a/public/acbc_mskcc_2015/case_lists/cases_sv.txt b/public/acbc_mskcc_2015/case_lists/cases_sv.txt
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+cancer_study_identifier: acbc_mskcc_2015
+stable_id: acbc_mskcc_2015_sv
+case_list_name: Samples with SV data
+case_list_description: All samples (12 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids: AdCC10T	AdCC3T	AdCC8T	AdCC1T	AdCC11T	AdCC2T	AdCC6T	AdCC5T	AdCC32T	AdCC4T	AdCC9T	AdCC12T
diff --git a/public/acbc_mskcc_2015/data_clinical_patient.txt b/public/acbc_mskcc_2015/data_clinical_patient.txt
diff --git a/public/acbc_mskcc_2015/data_clinical_sample.txt b/public/acbc_mskcc_2015/data_clinical_sample.txt
diff --git a/public/acbc_mskcc_2015/data_cna.txt b/public/acbc_mskcc_2015/data_cna.txt
diff --git a/public/acbc_mskcc_2015/data_gene_panel_matrix.txt b/public/acbc_mskcc_2015/data_gene_panel_matrix.txt
diff --git a/public/acbc_mskcc_2015/data_mutations.txt b/public/acbc_mskcc_2015/data_mutations.txt
diff --git a/public/acbc_mskcc_2015/data_sv.txt b/public/acbc_mskcc_2015/data_sv.txt
diff --git a/public/acbc_mskcc_2015/meta_clinical_patient.txt b/public/acbc_mskcc_2015/meta_clinical_patient.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/acbc_mskcc_2015/meta_clinical_sample.txt b/public/acbc_mskcc_2015/meta_clinical_sample.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/acbc_mskcc_2015/meta_cna.txt b/public/acbc_mskcc_2015/meta_cna.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: DISCRETE
+stable_id: cna
+show_profile_in_analysis_tab: true
+profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.
+profile_name: Putative copy-number alterations from GISTIC
+data_filename: data_cna.txt
diff --git a/public/acbc_mskcc_2015/meta_gene_panel_matrix.txt b/public/acbc_mskcc_2015/meta_gene_panel_matrix.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
+data_filename: data_gene_panel_matrix.txt
diff --git a/public/acbc_mskcc_2015/meta_mutations.txt b/public/acbc_mskcc_2015/meta_mutations.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_description: Whole exome sequencing of 12 breast AdCCs.
+profile_name: Mutations
+data_filename: data_mutations.txt
diff --git a/public/acbc_mskcc_2015/meta_study.txt b/public/acbc_mskcc_2015/meta_study.txt
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+type_of_cancer: acbc
+cancer_study_identifier: acbc_mskcc_2015
+name: Adenoid Cystic Carcinoma of the Breast (MSK, J Pathol. 2015)
+description: Whole exome sequencing of 12 breast AdCCs.
+short_name: ACBC (MSKCC/Breast 2015)
+public_study: true
+pmid: 26095796
+citation: Martelotto et al. J Pathol 2015
+groups: PUBLIC;ACYC
diff --git a/public/acbc_mskcc_2015/meta_sv.txt b/public/acbc_mskcc_2015/meta_sv.txt
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+cancer_study_identifier: acbc_mskcc_2015
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+stable_id: structural_variants
+show_profile_in_analysis_tab: true
+profile_name: Structural variants
+profile_description: Structural Variant Data.
+data_filename: data_sv.txt
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		The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license.