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Fix CLI options parser in 'has' + updated 'packages_all.sh' #83

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Sorry for the noise (several PR I closed), I muddled a bit between my branches.

Therefore this PR:

  1. getopt instead of bash built-in getopts -> it fixes the long options parser
  2. fixed --color option
  3. updated _usage(): added --color explanation, + small typo (-v instead of -V)
  4. updated tests due to 2.
  5. updated packages_all.sh regex in order to remove version, help, etc. from its output

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