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Update README.md
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cerebis authored Sep 28, 2016
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Expand Up @@ -34,14 +34,20 @@ sudo yum install perl5 python27 scons pip
- pysam
- PyYAML
- scipy
- scons
- SCons

On all systems, we recommend using [Pip](https://pip.pypa.io/en/stable/installing/) for installation and dependency management.

For example, on a system requiring root privileges and configured for ```sudo```, try the following.

```bash
sudo pip install -U biopython nestly networkx numpy pandas python-louvain pysam PyYAML scipy scons
sudo pip install -U biopython nestly networkx numpy pandas python-louvain pysam PyYAML scipy SCons
```

If installing SCons through Pip and you encounter an error, it may be necessary to install it as an Egg.

```bash
sudo pip install --egg SCons
```


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