added rebuild is false to prevent rebuilding of fasta index

kundajelab · Jul 3, 2023 · 4d95ad1 · 4d95ad1
1 parent 856240f
commit 4d95ad1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...net/helpers/make_gc_matched_negatives/get_genomewide_gc_buckets/get_genomewide_gc_bins.py b/...net/helpers/make_gc_matched_negatives/get_genomewide_gc_buckets/get_genomewide_gc_bins.py
@@ -27,7 +27,7 @@ def get_genomewide_gc(genome_fa, outf, width, stride):
     3000-4000 and delete 1000-2000. And repeat.
     """
 
-    f = pyfaidx.Fasta(genome_fa, as_raw=True)
+    f = pyfaidx.Fasta(genome_fa, as_raw=True, rebuild=False)
     outf = open(outf, 'w')
 
     div = width//stride