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evaluation scripts
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panushri25 committed Aug 27, 2024
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6 changes: 0 additions & 6 deletions src/evaluation/figure_notebooks/figure_6/Untitled3.ipynb

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chr_hg38
pos_hg38
allele1
allele2
snp_id
label
IsUsed
pval
beta
enformer.encsr000emt.variantscore.sad
enformer.encsr000emt.variantscore.sar
chrombpnet.gambian.variantscore.logfc
chrombpnet.gambian.variantscore.jsd
chrombpnet.esan.variantscore.logfc
chrombpnet.esan.variantscore.jsd
chrombpnet.mende.variantscore.logfc
chrombpnet.mende.variantscore.jsd
chrombpnet.yoruba.variantscore.logfc
chrombpnet.yoruba.variantscore.jsd
chrombpnet.maasai.variantscore.logfc
chrombpnet.maasai.variantscore.jsd
chrombpnet.luhya.variantscore.logfc
chrombpnet.luhya.variantscore.jsd
chrombpnet.encsr637xsc.variantscore.logfc
chrombpnet.encsr637xsc.variantscore.jsd
chrombpnet.encsr637xsc.variantscore.csr
chrombpnet.encsr637xsc.variantscore.pval
chrombpnet.encsr000emt.variantscore.logfc
chrombpnet.encsr000emt.variantscore.jsd
chrombpnet.encsr000emt.variantscore.csr
chrombpnet.encsr000emt.variantscore.pval
chrombpnet.encsr637xsc_50m.variantscore.logfc
chrombpnet.encsr637xsc_50m.variantscore.jsd
chrombpnet.encsr637xsc_50m.variantscore.csr
chrombpnet.encsr637xsc_50m.variantscore.pval
chrombpnet.encsr095qnb.variantscore.logfc
chrombpnet.encsr095qnb.variantscore.jsd
chrombpnet.encsr095qnb.variantscore.csr
chrombpnet.encsr095qnb.variantscore.pval
dbsnp_rsid
region
snp
distance
se
abs_beta
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##var.chrom:
##var.pos:
##var.allele1:
##var.allele2:
##var.rsid:
##var.label:
##var.isused:
##obs.estimate:
##pred.gkmsvm.encsr000emt.varscore.deltasvm:
##pred.enformer.encsr000emt.varscore.sad:
##pred.enformer.encsr000emt.varscore.sar:
##pred.chrombpnet.encsr000emt.varscore.logfc:
##pred.chrombpnet.encsr000emt.varscore.jsd:
##pred.chrombpnet.encsr000emt.varscore.crs:
##pred.chrombpnet.encsr000emt.varscore.pval:
##pred.chrombpnet.encsr000emt.varscore.aaq:
##pred.chrombpnet.encsr000emt.varscore.logfc_x_jsd:
##pred.chrombpnet.encsr000emt.varscore.jsd_x_aaq:
##pred.chrombpnet.encsr000emt.varscore.logfc_x_aaq:
##pred.chrombpnet.encsr637xsc.varscore.logfc:
##pred.chrombpnet.encsr637xsc.varscore.jsd:
##pred.chrombpnet.encsr637xsc.varscore.crs:
##pred.chrombpnet.encsr637xsc.varscore.pval:
##pred.chrombpnet.encsr637xsc.varscore.aaq:
##pred.chrombpnet.encsr637xsc.varscore.logfc_x_jsd:
##pred.chrombpnet.encsr637xsc.varscore.jsd_x_aaq:
##pred.chrombpnet.encsr637xsc.varscore.logfc_x_aaq:
##pred.chrombpnet.encsr637xsc_250m.varscore.logfc:
##pred.chrombpnet.encsr637xsc_250m.varscore.jsd:
##pred.chrombpnet.encsr637xsc_250m.varscore.crs:
##pred.chrombpnet.encsr637xsc_250m.varscore.pval:
##pred.chrombpnet.encsr637xsc_100m.varscore.logfc:
##pred.chrombpnet.encsr637xsc_100m.varscore.jsd:
##pred.chrombpnet.encsr637xsc_100m.varscore.crs:
##pred.chrombpnet.encsr637xsc_100m.varscore.pval:
##pred.chrombpnet.encsr637xsc_50m.varscore.logfc:
##pred.chrombpnet.encsr637xsc_50m.varscore.jsd:
##pred.chrombpnet.encsr637xsc_50m.varscore.crs:
##pred.chrombpnet.encsr637xsc_50m.varscore.pval:
##pred.chrombpnet.encsr637xsc_50m.varscore.aaq:
##pred.chrombpnet.encsr637xsc_50m.varscore.logfc_x_jsd:
##pred.chrombpnet.encsr637xsc_50m.varscore.jsd_x_aaq:
##pred.chrombpnet.encsr637xsc_50m.varscore.logfc_x_aaq:
##pred.chrombpnet.encsr637xsc_25m.varscore.logfc:
##pred.chrombpnet.encsr637xsc_25m.varscore.jsd:
##pred.chrombpnet.encsr637xsc_25m.varscore.crs:
##pred.chrombpnet.encsr637xsc_25m.varscore.pval:
##pred.chrombpnet.encsr637xsc_5m.varscore.logfc:
##pred.chrombpnet.encsr637xsc_5m.varscore.jsd:
##pred.chrombpnet.encsr637xsc_5m.varscore.crs:
##pred.chrombpnet.encsr637xsc_5m.varscore.pval:
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