Index entry serialization

[acquamarin]

This PR supports serializing index catalog entries to disk.
General idea:
Serialization:
We serialize the full index entries to disk.
Deserialization:
We only deserialize the base class and save the auxiliary information in an array.
When the extension is loaded, it is going to deserialize the auxiliary information stored in the array and recreate the index.

[codecov]

Codecov Report

Attention: Patch coverage is 25.00000% with 33 lines in your changes missing coverage. Please review.

Project coverage is 86.17%. Comparing base (080cbc0) to head (bb8dc8c).
Report is 2 commits behind head on master.

Files with missing lines	Patch %	Lines
src/catalog/catalog_entry/index_catalog_entry.cpp	0.00%	21 Missing ⚠️
...nclude/catalog/catalog_entry/index_catalog_entry.h	0.00%	6 Missing ⚠️
src/catalog/catalog_entry/catalog_entry.cpp	0.00%	3 Missing ⚠️
src/catalog/catalog.cpp	50.00%	2 Missing ⚠️
src/include/common/serializer/buffered_reader.h	83.33%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #4686      +/-   ##
==========================================
- Coverage   86.22%   86.17%   -0.06%     
==========================================
  Files        1369     1371       +2     
  Lines       58232    58270      +38     
  Branches     7206     7206              
==========================================
+ Hits        50213    50214       +1     
- Misses       7855     7892      +37     
  Partials      164      164              

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[github-actions]

Benchmark Result

Master commit hash: 0c6a394a32b9092e874b144516d9366a706e7d0b
Branch commit hash: 6b61e714fcc69ac1f80a6e7d8a5bc361b01a9a9e

Query Group	Query Name	Mean Time - Commit (ms)	Mean Time - Master (ms)	Diff
aggregation	q24	647.34	666.67	-19.32 (-2.90%)
aggregation	q28	12634.46	11065.46	1569.00 (14.18%)
copy	node-Comment	72654.50	N/A	N/A
copy	node-Forum	5595.89	N/A	N/A
copy	node-Organisation	1236.70	N/A	N/A
copy	node-Person	2003.18	N/A	N/A
copy	node-Place	1156.93	N/A	N/A
copy	node-Post	29437.27	N/A	N/A
copy	node-Tag	1247.89	N/A	N/A
copy	node-Tagclass	1131.00	N/A	N/A
copy	rel-comment-hasCreator	57629.73	N/A	N/A
copy	rel-comment-hasTag	89031.03	N/A	N/A
copy	rel-comment-isLocatedIn	72820.37	N/A	N/A
copy	rel-containerOf	15097.80	N/A	N/A
copy	rel-forum-hasTag	4002.93	N/A	N/A
copy	rel-hasInterest	3096.23	N/A	N/A
copy	rel-hasMember	117475.55	N/A	N/A
copy	rel-hasModerator	1297.11	N/A	N/A
copy	rel-hasType	293.48	N/A	N/A
copy	rel-isPartOf	251.96	N/A	N/A
copy	rel-isSubclassOf	256.06	N/A	N/A
copy	rel-knows	13575.54	N/A	N/A
copy	rel-likes-comment	174871.56	N/A	N/A
copy	rel-likes-post	71899.10	N/A	N/A
copy	rel-organisation-isLocatedIn	252.45	N/A	N/A
copy	rel-person-isLocatedIn	467.67	N/A	N/A
copy	rel-post-hasCreator	14442.46	N/A	N/A
copy	rel-post-hasTag	22404.31	N/A	N/A
copy	rel-post-isLocatedIn	18314.80	N/A	N/A
copy	rel-replyOf-comment	49884.16	N/A	N/A
copy	rel-replyOf-post	36786.32	N/A	N/A
copy	rel-studyAt	779.38	N/A	N/A
copy	rel-workAt	1641.12	N/A	N/A
filter	q14	128.33	135.68	-7.34 (-5.41%)
filter	q15	132.37	137.85	-5.48 (-3.97%)
filter	q16	303.87	311.89	-8.01 (-2.57%)
filter	q17	445.70	458.85	-13.16 (-2.87%)
filter	q18	1939.80	1951.28	-11.48 (-0.59%)
filter	zonemap-node	89.18	97.66	-8.48 (-8.69%)
filter	zonemap-node-lhs-cast	91.52	99.19	-7.67 (-7.73%)
filter	zonemap-node-null	86.46	95.14	-8.68 (-9.12%)
filter	zonemap-rel	5687.05	5771.06	-84.02 (-1.46%)
fixed_size_expr_evaluator	q07	572.66	598.74	-26.09 (-4.36%)
fixed_size_expr_evaluator	q08	803.57	820.53	-16.96 (-2.07%)
fixed_size_expr_evaluator	q09	801.54	830.88	-29.33 (-3.53%)
fixed_size_expr_evaluator	q10	236.44	257.47	-21.03 (-8.17%)
fixed_size_expr_evaluator	q11	231.52	251.51	-19.99 (-7.95%)
fixed_size_expr_evaluator	q12	226.23	247.01	-20.78 (-8.41%)
fixed_size_expr_evaluator	q13	1466.42	1487.80	-21.38 (-1.44%)
fixed_size_seq_scan	q23	115.93	134.46	-18.53 (-13.78%)
join	q29	615.94	618.88	-2.94 (-0.48%)
join	q30	10659.82	10218.46	441.36 (4.32%)
join	q31	5.59	8.03	-2.44 (-30.35%)
join	SelectiveTwoHopJoin	53.51	53.38	0.13 (0.24%)
ldbc_snb_ic	q35	2544.33	2584.14	-39.82 (-1.54%)
ldbc_snb_ic	q36	461.22	437.49	23.72 (5.42%)
ldbc_snb_is	q32	3.60	7.15	-3.55 (-49.70%)
ldbc_snb_is	q33	9.90	17.29	-7.39 (-42.74%)
ldbc_snb_is	q34	1.32	1.32	0.00 (0.10%)
multi-rel	multi-rel-large-scan	1356.17	1370.98	-14.81 (-1.08%)
multi-rel	multi-rel-lookup	19.67	21.75	-2.08 (-9.56%)
multi-rel	multi-rel-small-scan	68.79	93.15	-24.36 (-26.15%)
order_by	q25	145.35	140.08	5.27 (3.76%)
order_by	q26	456.61	466.46	-9.85 (-2.11%)
order_by	q27	1461.55	1488.59	-27.04 (-1.82%)
recursive_join	recursive-join-bidirection	290.45	290.18	0.27 (0.09%)
recursive_join	recursive-join-dense	7396.94	7491.91	-94.97 (-1.27%)
recursive_join	recursive-join-path	23623.51	24141.69	-518.19 (-2.15%)
recursive_join	recursive-join-sparse	1068.27	1075.83	-7.56 (-0.70%)
recursive_join	recursive-join-trail	7301.20	7408.65	-107.45 (-1.45%)
scan_after_filter	q01	170.88	183.67	-12.79 (-6.96%)
scan_after_filter	q02	157.75	169.27	-11.52 (-6.81%)
shortest_path_ldbc100	q37	95.23	84.03	11.20 (13.33%)
shortest_path_ldbc100	q38	348.34	373.50	-25.16 (-6.74%)
shortest_path_ldbc100	q39	63.07	59.41	3.65 (6.15%)
shortest_path_ldbc100	q40	452.17	415.67	36.50 (8.78%)
var_size_expr_evaluator	q03	2051.10	2096.91	-45.80 (-2.18%)
var_size_expr_evaluator	q04	2269.05	2260.65	8.40 (0.37%)
var_size_expr_evaluator	q05	2605.38	2665.41	-60.03 (-2.25%)
var_size_expr_evaluator	q06	1326.23	1349.59	-23.36 (-1.73%)
var_size_seq_scan	q19	1447.00	1483.26	-36.26 (-2.44%)
var_size_seq_scan	q20	2614.76	2691.53	-76.77 (-2.85%)
var_size_seq_scan	q21	2276.64	2302.03	-25.40 (-1.10%)
var_size_seq_scan	q22	126.70	129.64	-2.94 (-2.27%)

[ray6080]

Can you also put a high level description of how the serialize/deSerialize of index entries work for extensions?

Otherwise looks good to me. See some comments below.

[github-actions]

Benchmark Result

Master commit hash: decc6d5823880dbb9ae7194d12d608decb7ec5a8
Branch commit hash: ca59ba3cbbea5c714ae4ea0ed2c96fa60fba75d5

Query Group	Query Name	Mean Time - Commit (ms)	Mean Time - Master (ms)	Diff
aggregation	q24	649.35	643.95	5.40 (0.84%)
aggregation	q28	11901.10	11660.75	240.35 (2.06%)
copy	node-Comment	73667.68	68451.44	5216.24 (7.62%)
copy	node-Forum	5695.32	5488.48	206.84 (3.77%)
copy	node-Organisation	1224.71	1208.26	16.45 (1.36%)
copy	node-Person	2294.77	2139.74	155.03 (7.25%)
copy	node-Place	1219.10	1147.13	71.97 (6.27%)
copy	node-Post	28926.21	30123.40	-1197.19 (-3.97%)
copy	node-Tag	1258.68	1226.60	32.08 (2.62%)
copy	node-Tagclass	1144.80	1173.21	-28.41 (-2.42%)
copy	rel-comment-hasCreator	55767.81	57910.42	-2142.61 (-3.70%)
copy	rel-comment-hasTag	89295.38	90209.68	-914.30 (-1.01%)
copy	rel-comment-isLocatedIn	73000.89	71367.13	1633.76 (2.29%)
copy	rel-containerOf	14534.76	15333.46	-798.70 (-5.21%)
copy	rel-forum-hasTag	4051.38	4014.23	37.15 (0.93%)
copy	rel-hasInterest	3088.07	3075.03	13.04 (0.42%)
copy	rel-hasMember	119759.28	123809.85	-4050.57 (-3.27%)
copy	rel-hasModerator	1334.27	1345.72	-11.45 (-0.85%)
copy	rel-hasType	294.15	284.08	10.07 (3.54%)
copy	rel-isPartOf	289.25	325.02	-35.77 (-11.01%)
copy	rel-isSubclassOf	250.69	271.51	-20.82 (-7.67%)
copy	rel-knows	13562.07	13915.39	-353.32 (-2.54%)
copy	rel-likes-comment	178418.43	181294.75	-2876.32 (-1.59%)
copy	rel-likes-post	70683.92	67694.13	2989.79 (4.42%)
copy	rel-organisation-isLocatedIn	247.91	244.20	3.71 (1.52%)
copy	rel-person-isLocatedIn	436.71	513.90	-77.19 (-15.02%)
copy	rel-post-hasCreator	14506.86	14630.62	-123.76 (-0.85%)
copy	rel-post-hasTag	22760.86	22502.55	258.31 (1.15%)
copy	rel-post-isLocatedIn	18048.07	18303.12	-255.05 (-1.39%)
copy	rel-replyOf-comment	52930.79	47388.20	5542.59 (11.70%)
copy	rel-replyOf-post	38754.74	37680.53	1074.21 (2.85%)
copy	rel-studyAt	800.99	761.69	39.30 (5.16%)
copy	rel-workAt	1543.69	1564.97	-21.28 (-1.36%)
filter	q14	128.67	129.08	-0.41 (-0.32%)
filter	q15	131.88	125.65	6.23 (4.96%)
filter	q16	312.24	309.40	2.84 (0.92%)
filter	q17	452.98	446.79	6.19 (1.39%)
filter	q18	1992.42	1934.79	57.63 (2.98%)
filter	zonemap-node	90.47	89.14	1.32 (1.49%)
filter	zonemap-node-lhs-cast	90.56	89.31	1.25 (1.40%)
filter	zonemap-node-null	86.33	85.19	1.14 (1.34%)
filter	zonemap-rel	5785.17	5756.87	28.29 (0.49%)
fixed_size_expr_evaluator	q07	572.40	576.03	-3.63 (-0.63%)
fixed_size_expr_evaluator	q08	820.00	803.63	16.37 (2.04%)
fixed_size_expr_evaluator	q09	806.27	807.16	-0.89 (-0.11%)
fixed_size_expr_evaluator	q10	237.05	239.15	-2.10 (-0.88%)
fixed_size_expr_evaluator	q11	230.60	233.61	-3.01 (-1.29%)
fixed_size_expr_evaluator	q12	227.13	226.41	0.73 (0.32%)
fixed_size_expr_evaluator	q13	1489.18	1459.02	30.16 (2.07%)
fixed_size_seq_scan	q23	115.22	108.29	6.93 (6.40%)
join	q29	598.53	617.79	-19.26 (-3.12%)
join	q30	10566.24	10120.48	445.76 (4.40%)
join	q31	5.08	7.32	-2.24 (-30.56%)
join	SelectiveTwoHopJoin	53.37	52.58	0.79 (1.50%)
ldbc_snb_ic	q35	2578.32	2506.95	71.38 (2.85%)
ldbc_snb_ic	q36	436.66	469.19	-32.53 (-6.93%)
ldbc_snb_is	q32	4.54	3.87	0.67 (17.41%)
ldbc_snb_is	q33	12.25	13.72	-1.48 (-10.77%)
ldbc_snb_is	q34	1.39	1.50	-0.11 (-7.13%)
multi-rel	multi-rel-large-scan	1324.72	1302.00	22.72 (1.74%)
multi-rel	multi-rel-lookup	18.02	24.38	-6.36 (-26.08%)
multi-rel	multi-rel-small-scan	77.65	76.69	0.96 (1.25%)
order_by	q25	132.04	129.16	2.88 (2.23%)
order_by	q26	450.77	448.84	1.93 (0.43%)
order_by	q27	1477.69	1456.60	21.09 (1.45%)
recursive_join	recursive-join-bidirection	303.72	281.94	21.78 (7.72%)
recursive_join	recursive-join-dense	7387.19	7322.47	64.72 (0.88%)
recursive_join	recursive-join-path	23975.75	24035.02	-59.27 (-0.25%)
recursive_join	recursive-join-sparse	1063.37	1056.00	7.37 (0.70%)
recursive_join	recursive-join-trail	7353.57	7294.89	58.69 (0.80%)
scan_after_filter	q01	173.90	170.53	3.37 (1.98%)
scan_after_filter	q02	159.36	155.05	4.31 (2.78%)
shortest_path_ldbc100	q37	83.50	90.35	-6.84 (-7.58%)
shortest_path_ldbc100	q38	370.96	371.71	-0.75 (-0.20%)
shortest_path_ldbc100	q39	62.00	61.64	0.36 (0.58%)
shortest_path_ldbc100	q40	421.27	400.90	20.36 (5.08%)
var_size_expr_evaluator	q03	2103.97	2059.42	44.55 (2.16%)
var_size_expr_evaluator	q04	2313.80	2222.65	91.14 (4.10%)
var_size_expr_evaluator	q05	2662.32	2606.73	55.58 (2.13%)
var_size_expr_evaluator	q06	1322.09	1317.42	4.68 (0.36%)
var_size_seq_scan	q19	1447.37	1444.53	2.84 (0.20%)
var_size_seq_scan	q20	2617.18	2679.22	-62.03 (-2.32%)
var_size_seq_scan	q21	2314.97	2317.01	-2.04 (-0.09%)
var_size_seq_scan	q22	129.18	126.87	2.30 (1.82%)