ssq: super simple queue

super simple script to make your LSF life better

1. creates LSF job array from job file (one job per line)
2. sends email notification upon completion

usage

usage: ssq.py [-h] --job-file JOB_FILE [--job-name JOB_NAME]
              [--max-jobs MAX_JOBS] [-P PROJECT] [-q QUEUE] [-W WALLTIME]
              [--node NODE] [--core CORE] [--mem MEM] [--other OTHER]
              [--email EMAIL]

super simple queue

optional arguments:
  -h, --help            show this help message and exit
  --job-file JOB_FILE   job file, one self-contained job per line
  --job-name JOB_NAME   name of your job array
  --max-jobs MAX_JOBS   maximum number of simultaneously running jobs from the
                        job array
  -P PROJECT, --project PROJECT
                        project name
  -q QUEUE, --queue QUEUE
                        queue name
  -W WALLTIME, --walltime WALLTIME
                        wall time limit (HH:MM)
  --node NODE           number of nodes per job
  --core CORE           number of cores per job
  --mem MEM             memory per node
  --other OTHER         other lsf argument(s)
  --email EMAIL         email after last job finishes

install

git clone https://github.com/leelaboratory/ssq.git

# (optional)
echo alias ssq=\"/path/to/ssq/ssq.py\" >> ~/.bashrc
source ~/.bashrc
ssq -h

example

ssq --job-file test_jobfile --job-name test_jobname --project acc_yourprojectname --queue express --walltime 12:00 --max-jobs 20 --core 2 --mem 4G --email [email protected]