Examples
The Genome Context Viewer was originally developed for the Legume Information System and Legume Federation websites, which use the Phytozome gene families. Here you will find a variety of non-legume examples, including Arabidopsis and related Brassicaceae species, as well as metazoan and yeast examples using the TreeFam families.
This example is from the upcoming manuscript on version 2 of GCV.
It depicts seven query tracks derived from Glycine genes belonging to the same ethylene responsive transcription factor gene family.
Specifically, the query genes are: glycy.G1267.gnm1.ann1.Gcy9g022213, glydo.G1134.gnm1.ann1.Gtt35g097310, glyd3.G1403.gnm1.ann1.Gto15g040369, glyso.PI483463.gnm1.ann1.GlysoPI483463.09G188700, glydo.G1134.gnm1.ann1.Gtt9g025284, glyma.Wm82.gnm4.ann1.Glyma.09G233800, and glyfa.G1718.gnm1.ann1.Gfa9g026380.
This specific view and be seen here.
Note that the macro-synteny view will need to be loaded manually by opening the "Macor Views" dropdown menu and selecting "glyma.Wm82.gnm4.Gm09".
By default, the macro-synteny view will be opened on top of the micro-synteny view it belongs to.
The macro-synteny view can be moved so both view are visible at the same time by grabbing the tab in the upper-left corner and dragging the view to a different location on the screen.
