Services API

Basic Micro-Synteny Tracks

Takes a set of focus gene identifiers and the number of neighbors to display on either side of each gene. Returns the set of tracks centered about the given focus genes.

• URL

  /micro-synteny-basic/

• Method:

  POST

• URL Params

  Required:

None

• Data Params

  genes=[gene_id, ...] numNeighbors=Number

• Success Response:

  • Code: 200
    Content:

  {
    families: [{
      id : String,
      name : String
    }, ...],
    groups: [{
      chromosome_name: String,
      chromosome_id: String,
      species_name: String,
      species_id: String,
      genes: [{
        id: String,
        name: String,
        fmin: Integer,
        fmax: Integer,
        strand: 0 | -1 | 1,
        family: String
      }]
    }, ...]
  }

• Error Response:

  • Code: 404 NOT FOUND

• Sample Call:

    $.ajax({
      url: "/micro-synteny-basic/",
      dataType: "json",
      data: {
        genes: ["lotja.Lj0g3v0166889", "Ccicar.Ca_05015_gene"],
        numNeighbors: 10
      },
      type : "POST",
      success : function (r) {
        console.log(r);
      }
    });