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lh3 committed Nov 21, 2019
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6 changes: 4 additions & 2 deletions README.md
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Expand Up @@ -16,6 +16,8 @@ gfatools gfa2fa -s out.gfa > out.fa

## Table of Contents

<img align="right" width="278" src="doc/example1.png"/>

- [Getting Started](#started)
- [Introduction](#intro)
- [Users' Guide](#uguide)
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## <a name="intro"></a>Introduction

<img align="right" width="278" src="doc/example1.png"/>

Minigraph is a *proof-of-concept* sequence-to-graph mapper and graph
constructor. It finds *approximate* locations of a query sequence in a sequence
graph and incrementally augments an existing graph with long query subsequences
Expand All @@ -50,6 +50,8 @@ non-standard dependency is [zlib][zlib].

### <a name="map"></a>Sequence-to-graph mapping

<img align="right" width="278" src="doc/example2.png"/>

To map sequences against a graph, you should prepare the graph in the [GFA
format][gfa1], or preferrably the [rGFA format][rgfa]. If you don't have
a graph, you can generate a graph from multiple samples (see the [Graph
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