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Minigraph-0.12 (r389)

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@lh3 lh3 released this 26 Oct 15:46
· 231 commits to master since this release
v0.12
78ce999

Notable changes:

  • Improve alignments towards ends of graph segments. If there is an SV close to
    the ends but not at the ends, older versions may produce an excessively
    large bubble including high-identity matches.

  • Heuristically accelerates alignment in complex subgraphs by skipping
    many unnecessary sequence-aware graph traversals. This speeds up graph
    generation for CHM13 by three folds without obviously affecting accuracy.

  • Added option --inv to optionally disable inversions. Graph traversal is hard
    with inversions.

  • Fixed the bug that prevents large -K.

  • Apply option -K4g to the asm preset.

  • Added option --write-mz to output the positions of minimizer anchors.

(26 October 2020, r389)

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