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0.6.1-beta

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@dancooke dancooke released this 02 Mar 17:27
· 1443 commits to develop since this release
v0.6.1-beta
c6cf3f8

This is a minor release that fixes some bugs, compilation issues, and adds better binary version logging.

Changes

  • The git branch and commit, are some system information are now logged during compilation. This information is available with the --version command. [242dd00, 36a6a82, c6c397d]
  • Adds measure ADP for assigned sequence depth (i.e. reads assigned to a unique called allele). [702109e]
  • Adds measures ADP and VL to default random forest measures. [a035953]
  • Adds support for gzipped region files (for options --regions-file and --skip-regions-file) [ec41af4]
  • Reads that cannot be assigned to a unique haplotype are assigned randomly to any of the supporting haplotypes for bam realignment (rather than always assigning to one of them). [cb3faf9]

Bug fixes

  • Corrects measures AD and AF calculations. [2a6a106 , 66e4466]
  • Adds check for overflow in SIMD pHMM method that could result in segfaults. [08c2310]
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