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Octopus 0.7.3
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@dancooke dancooke released this 16 Apr 09:36
· 8 commits to master since this release
v0.7.3
512766d

This release contains several minor improvements:

  • Replaces the old random forest training procedure with a Snakemake version. [e0c4922]
  • All annotations can now requested even if they are not active. [9bb584c]
  • Annotations will be default no longer be aggregated when --disable-call-filtering is used. To aggregate annotations for forest training, the --aggregate-annotations option is added. [42f4248]
  • Big runtime improvement to the cell calling model. [bc062d2]
  • Change the default --max-genotype-combinations to 100,000 for trio and population calling. This improves runtime considerably but has little impact on accuracy. [18fcbcb]
  • Trains a new germline random forest using much less training data overall but more trio data.
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