Start writing automated tests for MMS; renormalise manufactured distribution functions#64

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johnomotani wants to merge 30 commits intoradial-vperp-standard-DKE-with-neutralsfrom radial-vperp-standard-DKE-auto-MMS

+1,504-544

Commits on Jun 21, 2022

Refactor loading of coordinates data
johnomotani
committed
Start working on automated test for MMS
johnomotani
committed
Use absolute not relative errors
johnomotani
committed
Fix missing mk_float argument to ensure Chebyshev weights are mk_float
johnomotani
committed
Use cos instead of sin so manufactured solution has perturbation at t=0
johnomotani
committed
Functions to build manufactured RHS expression/function
johnomotani
committed
Bugfix - use begin_s_r_z_region() in ssp_rk!()
johnomotani
committed
Hacky function for evaluating df/dt
johnomotani
committed
Move advance_info definition to input_structs.jl
johnomotani
committed
Add vpa variation in manufactured solution for dfni
johnomotani
committed
Test case evaluating RHS with manufactured f
johnomotani
committed
Parallelise loop initialising manufactured solutions
johnomotani
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Fix so "zero" bc works for vpa coordinate
johnomotani
committed
MMS test: use "zero" bc for vpa, non-zero upar, correct f normalization
johnomotani
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Remove points affected by bc in MMS test
johnomotani
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Support neutrals when calculating rhs in manufactured_solns.jl
johnomotani
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Support neutrals in test/manufactured_ddt_tests.jl
johnomotani
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Make initial neutral density perturbation non-zero
johnomotani
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Fix dfnn normalisation, add odd components, rationalise argument orders
johnomotani
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Fix cartesian_dfni_sym(), gyroaveraged_dfnn_sym() to include norm
johnomotani
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(Re-)add charge exchange term in manufactured rhs for ion equation
johnomotani
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Fix indexing typo in charge_exchange_collisions_3V!()
johnomotani
committed

Commits on Jun 22, 2022

Simplify declaration of netcdf_info struct
johnomotani
committed
Update load_coordinate_data() for refactored coordinates setup
johnomotani
committed
Update sound wave tests for refactored coordinates setup
johnomotani
committed

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Start writing automated tests for MMS; renormalise manufactured distribution functions#64

Commits on Jun 21, 2022

Refactor loading of coordinates data

Start working on automated test for MMS

Use absolute not relative errors

Fix missing mk_float argument to ensure Chebyshev weights are mk_float

Use cos instead of sin so manufactured solution has perturbation at t=0

Functions to build manufactured RHS expression/function

Bugfix - use begin_s_r_z_region() in ssp_rk!()

Hacky function for evaluating df/dt

Move advance_info definition to input_structs.jl

Add vpa variation in manufactured solution for dfni

Test case evaluating RHS with manufactured f

Parallelise loop initialising manufactured solutions

Fix so "zero" bc works for vpa coordinate

MMS test: use "zero" bc for vpa, non-zero upar, correct f normalization

Remove points affected by bc in MMS test

Support neutrals when calculating rhs in manufactured_solns.jl

Support neutrals in test/manufactured_ddt_tests.jl

Make initial neutral density perturbation non-zero

Fix dfnn normalisation, add odd components, rationalise argument orders

Fix cartesian_dfni_sym(), gyroaveraged_dfnn_sym() to include norm

(Re-)add charge exchange term in manufactured rhs for ion equation

Fix indexing typo in charge_exchange_collisions_3V!()

Commits on Jun 22, 2022

Simplify declaration of netcdf_info struct

Update load_coordinate_data() for refactored coordinates setup

Update sound wave tests for refactored coordinates setup

Commits on Jun 23, 2022

Fix some accidental allocations

Run cases without neutrals in manufactured_ddt_tests.jl

Use slightly lower v-space resolution for MMS tests

Parallelise manufactured_solutions_as_arrays(), manufactured_rhs_as_array()

More convenient choice of maximum n_element in manufactured_ddt_tests.jl