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Feature/prokka in annotation#171

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bosterholz merged 16 commits intodevmetagenomics/metagenomics-tk:devfrom feature/prokkaInAnnotationmetagenomics/metagenomics-tk:feature/prokkaInAnnotationCopy head branch name to clipboardJun 7, 2022

+200-210

Commits

Commits on Apr 28, 2022

• feat(annotation): replaced prodigal with prokka in annotation module

  nkleinbo

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• feat(annotation): removed prokka, moved to annotation module

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• feat(annotation): prokka moved from magAttributes to annotation and replaces prodigal

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• feat(annotation): prokka moved from magAttributes to annotation and replaces prodigal

  nkleinbo

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• feat(annotation): removed duplicate prokka container and set to own container

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• feat(annotation): prokka moved from magAttributes to annotation module and replaces prodigal, annotation module now gets gtdb results for prokka call

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Commits on Apr 29, 2022

• feat(annotation): prokka moved from magAttributes to annotation module and replaces prodigal, annotation module now gets gtdb results for prokka call

  nkleinbo

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Commits on May 6, 2022

• feat(annotation): replaced prokka 1.12 with prokka 1.14.6

  

  Ubuntu

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• feat(annotation): added tsv output which is available again in prokka 1.14.6

  

  Ubuntu

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• feat(annotation): Re-added documentation for _wAnnotation

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  nkleinbo

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• feat(annotation): Removed test output

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  nkleinbo

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• fix(annotation): Removed containerOptions in pProkka

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  nkleinbo

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Commits on May 10, 2022

• fix(annotation): correct indention

  nkleinbo

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  3f479fb

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• fix(annotation): _wAnnotation missed parameter in wAnnotateFile

  nkleinbo

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Commits on May 17, 2022

• fix(annotation): input.fasta should be removed after prokka execution

  nkleinbo

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Commits on May 28, 2022

• fix(annotation): typo + review changes

  

  bosterholz

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