Discuit.jl

Fast parameter inference for discrete state space continuous time (DSSCT) models in Julia

Build Status
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The Discuit.jl package contains tools for parameter inference and simulation of discrete state space continuous time (DSSCT) models in Julia. See Discuit in R for the corresponding R package.

Features

• Customisable finite adaptive MCMC algorithm for fast parameter inference.
• Pooley model based proposal (MBP) method for improved mixing.
• Simulation via the Gillespie direct method.
• Automated tools for convergence diagnosis and analysis.

Installation

The package is not registered and must be added via the package manager Pkg. From the REPL type ] to enter the Pkg mode and run:

pkg> add https://github.com/mjb3/Discuit.jl

Usage

See the package documentation for further information and examples.