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Use cleaned epochs for sensor-space decoding
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We accidentally used the non-cleaned epochs for classification.
This issue probably snuck in during the recent set of refactorings.

@larsoner I've only checked the decoding scripts so far, because
this is what I'm currently working with. I'm not sure if other places
are affected as well. We should check the source-space scripts too.

Could you kindly take over if you find the time?
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hoechenberger committed Oct 25, 2023
1 parent 9904fb3 commit 5837821
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Showing 3 changed files with 3 additions and 0 deletions.
1 change: 1 addition & 0 deletions mne_bids_pipeline/steps/sensor/_02_decoding_full_epochs.py
Original file line number Diff line number Diff line change
Expand Up @@ -60,6 +60,7 @@ def get_input_fnames_epochs_decoding(
run=None,
recording=cfg.rec,
space=cfg.space,
processing="clean",
suffix="epo",
extension=".fif",
datatype=cfg.datatype,
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Original file line number Diff line number Diff line change
Expand Up @@ -65,6 +65,7 @@ def get_input_fnames_time_decoding(
run=None,
recording=cfg.rec,
space=cfg.space,
processing="clean",
suffix="epo",
extension=".fif",
datatype=cfg.datatype,
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1 change: 1 addition & 0 deletions mne_bids_pipeline/steps/sensor/_05_decoding_csp.py
Original file line number Diff line number Diff line change
Expand Up @@ -124,6 +124,7 @@ def get_input_fnames_csp(
run=None,
recording=cfg.rec,
space=cfg.space,
processing="clean",
suffix="epo",
extension=".fif",
datatype=cfg.datatype,
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