Merge remote-tracking branch 'origin/main' into feat/ar_gene_filtering

molgenis · Oct 13, 2022 · 2573fa6 · 2573fa6
2 parents 570008f + f1096da
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diff --git a/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/auc.png b/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/auc.png
diff --git a/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/roc.png b/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/roc.png
diff --git a/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/score_differences.png b/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/score_differences.png
diff --git a/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/score_distributions.png b/validation/4.0.0/4.0.0-rc2/4.0.0rc1-4.0.0rc2_build38/score_distributions.png
diff --git a/validation/4.0.0/4.0.0-rc3/1.1-4.0.0rc3_build37/README.md b/validation/4.0.0/4.0.0-rc3/1.1-4.0.0rc3_build37/README.md
@@ -0,0 +1,12 @@
+# v1.1 compared to 4.0.0
+
+The comparison between CAPICE v1.1 (Li et al.) and CAPICE 4.0.0 is performed with a modified requirements.txt. The following libraries were used to score the variants in v1.1: 
+
+```
+numpy==1.22.2
+pandas==1.4.1
+scikit-learn==1.0.2
+xgboost==0.90
+```
+
+The libraries for CAPICE 4.0.0 were not modified from the [setup.py](https://github.com/molgenis/capice/blob/v4.0.0/setup.py).
diff --git a/validation/4.0.0/4.0.0-rc3/1.1-4.0.0rc3_build37/difference.png b/validation/4.0.0/4.0.0-rc3/1.1-4.0.0rc3_build37/difference.png
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diff --git a/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build37/score_distributions.png b/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build37/score_distributions.png
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diff --git a/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build38/score_differences.png b/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build38/score_differences.png
diff --git a/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build38/score_distributions.png b/validation/4.0.0/4.0.0-rc3/3.3.0-4.0.0_build38/score_distributions.png
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diff --git a/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/auc.png b/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/auc.png
diff --git a/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/roc.png b/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/roc.png
diff --git a/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/score_differences.png b/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/score_differences.png
diff --git a/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/score_distributions.png b/validation/4.0.0/4.0.0-rc3/4.0.0rc2-4.0.0rc3_build38/score_distributions.png
diff --git a/validation/README.md b/validation/README.md
@@ -0,0 +1,5 @@
+# Validation
+
+This folder holds validation figures for each new CAPICE model.
+
+If no X.X.X-final folder is supplied, consider the latest release candidate as final release.