access hpo id for creating list of observed phenotypes

monarch-initiative · May 10, 2024 · b1873c3 · b1873c3
1 parent 9eb66e5
commit b1873c3
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/pheval_ai_marrvel/prepare/prepare_input.py b/src/pheval_ai_marrvel/prepare/prepare_input.py
@@ -7,7 +7,8 @@
 
 def obtain_observed_hpo_ids(phenopacket: Phenopacket) -> str:
     observed_phenotypes = PhenopacketUtil(phenopacket).observed_phenotypic_features()
-    observed_hpo_ids = "/n".join(observed_phenotypes)
+    observed_hpo_ids = [hpo_id.id for hpo_id in observed_phenotypes]
+    observed_hpo_ids = "/n".join(observed_hpo_ids)
     return observed_hpo_ids