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125 Open 66 Closed
125 Open 66 Closed
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Issues list

Data normalisation, Annotate FACETS output and how to identify tandem duplication pattern
#206 opened Jan 25, 2025 by tanayb001
Issues in FACETS Tumor Purity Estimation with Nanopore Sequencing Data
#205 opened Dec 2, 2024 by Fenne-FU
1
Purity values NA and suggestions?
#204 opened Nov 20, 2024 by jiwonhong95
1
snp-pileup for mm10/GRCm38 mouse
#203 opened Nov 3, 2024 by ahwanpandey
5
Enquiry on consistent segments amplified/deleted across most samples
#202 opened Oct 1, 2024 by michelle-jahja
3
How to resolve variability in results due to different random seeds?
#201 opened Sep 19, 2024 by ehhfy
4
mm39 in the preProcSample {facets}
#200 opened Jun 26, 2024 by karolina16
1
cf.em too low?
#198 opened Apr 8, 2024 by THT-sleepy
snp_pileup returning no calls.
#196 opened Jan 10, 2024 by apallav21
What is difference between CNCF and EM plot/algorithm?
#195 opened Nov 7, 2023 by allthetime115
question about ploidy estimate
#193 opened May 30, 2023 by guillaume-rs
1
Impact of FFPE preservation
#189 opened Apr 10, 2023 by mybabyfox
Calling CNA from Cat genome; custom
#188 opened Mar 27, 2023 by makarov-ccf
3
Questions about ploidy estimate
#187 opened Feb 28, 2023 by ysbioinfo
pythonize snp-pileup
#186 opened Jan 27, 2023 by veseshan
the output description of the jointseg.txt
#185 opened Dec 8, 2022 by litun-fkby
Snp-pileup failed to return data
#184 opened Oct 28, 2022 by boonhaohong
8
fewer heterozygous variants
#183 opened Oct 19, 2022 by jsha129
4
Error "replacement has 0 rows", caused by dipLogR=numeric(0)
#182 opened Oct 17, 2022 by ypradat
2
Generat snplocs* files
#181 opened Oct 7, 2022 by Jiayi-Wang-Joey
Installation error
#180 opened Oct 3, 2022 by Jiayi-Wang-Joey
MacOS installation error | clang (LLVM option parsing): Unknown command line argument '-x86-pad-for-align=false'
#179 opened Sep 12, 2022 by oliverartz
2
purity is NA and how to interpret the plot
#178 opened Jun 30, 2022 by stroke1989
2
WISH: Add CITATION file => citation(package = "facets") mentions paper
#176 opened Jun 26, 2022 by HenrikBengtsson
only call individul normal bam
#175 opened May 18, 2022 by gaom001
ProTip! Adding no:label will show everything without a label.